Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq21 268 1e-66 >seq21 Length=1141120 Score = 268 bits (296), Expect = 1e-66 Identities = 524/756 (69%), Gaps = 20/756 (3%) Strand=Plus/Plus Query 53192 TTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTAC 53251 |||||||| ||||| | || || ||||| | || || | || |||||||||||| Sbjct 323456 TTCATGCGTGTCGCTCTCGGCATTCACGGCGCAGATCTCAAGAACGTGCGTGAGACGTAC 323515 Query 53252 GACTTAATGAGCCAAAAG-TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 ||| | ||| |||| | | ||| || |||||||| || ||||| || ||||| || || Sbjct 323516 GACCTCATGT-CCAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTTTAACGCCGGCAC 323574 Query 53311 GAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGATGACTCGATCGA 53367 | || || ||| |||| |||||||||||||| |||||| ||| ||||| Sbjct 323575 CCCGAAGCCGCAAATG---AGCTCGTGCTTCCTGGTGGCGTCGAAGGAAGACAGCATCGA 323631 Query 53368 CGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 |||||||||||| ||||| |||||||| || ||| ||| | | || || || || Sbjct 323632 CGGCATCTACGACACGCTGAAGGAGTGCGCGGTGATCAGCAAAGCGGCCGGCGGCATTGG 323691 Query 53428 TATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG 53486 | ||| ||| | ||| |||| ||| |||| || || ||||||||| || Sbjct 323692 CCTGCACGTGCAC-AACATCCGCGCGGCGGGCAGCTACATAGCTGGTACGAACGGCA-CG 323749 Query 53487 CCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAG 53545 ||| || ||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 323750 TCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTACGTGGACCAG 323809 Query 53546 GGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATT 53605 ||||| || ||||||||||| | || ||| |||| |||||||| |||||||||||| | Sbjct 323810 GGTGGCGGTAAGCGCAAGGGCGCCTTTGCCGTCTATCTCGAGCCCTGGCACGCCGACGTC 323869 Query 53606 ATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTG 53665 | | ||||| |||| | || ||| | || || |||| ||| ||||| Sbjct 323870 TTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCCCGCGACCTC 323929 Query 53666 TTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG-GAGAAG-GACGAGGAGT 53723 || || |||||||| || || || || ||| | ||| || ||| || | | ||| Sbjct 323930 TTCTATGCGCTGTGGATCCCAGATCTGTTTATG--AGGCGTGTGAAAAGCGAGGGGAAGT 323987 Query 53724 GGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTA 53783 || |||||| || ||| |||||| |||||| | | ||| |||||||||||| Sbjct 323988 GGACGCTGATGGATCCCAACACGTGCCCGGGCCTCAGCGATTGCTATGGTGAGGAGTTTG 324047 Query 53784 ACGAGATGTATCGGACG-TACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCG 53841 | || | || || || |||| ||| | |||||||| | |||| | || |||| | Sbjct 324048 AGCAGCTCTA-CGAGCGCTACG-AGTCCGAGGGCCGCGGCGTCAAGACGATCCAGGCCCA 324105 Query 53842 TGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTA 53901 || || ||| ||| ||||| || ||| | |||||||| ||||| ||| ||| Sbjct 324106 GGAAGTGTGGTTTGCCATCCTGGAGTCGCAGATCGAGACGGGCGGGCCGTTCATCCTCTA 324165 Query 53902 CAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 |||||| | |||| ||| ||||||||||| Sbjct 324166 CAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAA 324201 Score = 104 bits (114), Expect = 3e-17 Identities = 126/166 (76%), Gaps = 8/166 (5%) Strand=Plus/Plus Query 55477 GGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCAT 55536 |||| | |||||||||||||| || || || |||||||||||||| || | ||||| | Sbjct 324727 GGGCATGCGCAACTCCCTGCTGGTTGCCCCCATGCCAACCGCGTCCACCTCGCAGATTCT 324786 Query 55537 GGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG-GACCCTAG 55595 |||||||||||| |||||||| | || | ||||||||| | ||||| | | || Sbjct 324787 CGGCAACAACGAGTGCTTCGAGCCCTTTACCTCGAACATCTACGTCCGCCGTGTGCTGAG 324846 Query 55596 CAGGTGAGTT---TGTCATGATCAACAAGCACCTCGTCAAGGACCT 55638 | || ||||| ||| || | |||||| ||||||||| |||||| Sbjct 324847 C-GGCGAGTTCCCTGT--TG-TGAACAAGTACCTCGTCATGGACCT 324888 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 153843 GAAAACGTTAGCCAACTTGGCACCGTAACCATTGCGACCGCCCGTCACGCGTTG-TTCCT 153901 ||||||||| | || ||| || ||| | || ||||| ||||||||||| | ||| |||| Sbjct 885128 GAAAACGTTCGTCAGCTTCGCGCCGAAGCCGTTGCGCCCGCCCGTCAC-CTTTGCCTCCT 885070 Query 153902 CGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGTTCAGGGATCCAGA 153958 | |||| |||||||||| ||| | ||||||||| ||||| | ||| || | ||||| Sbjct 885069 CATCGTCGTAGTTGGAGGAGGTGAGAAGGTGCCCGAAGATCATTTCCGGCACCCAGA 885013 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 55732 GGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGA 55791 |||| |||||||||| |||||||||||||||||| | ||||| || ||| || Sbjct 324985 GGAGCTTTACCGGACCGTGTGGGAGATTCCACAGCGCAAGCTGATAGATATGGCACGCGA 325044 Query 55792 TCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGA-ATCCTTCAC 55850 || || |||||| |||||||| ||||| |||||| ||||| | ||| || | | Sbjct 325045 CCGCGGCCAGTACATTGACCAGTCGCAGTCGCTGAACCTCTTCCTCCAGAGCCCCACCTC 325104 Query 55851 TGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGT 55910 |||| || | | || |||| ||| || ||| || || || ||||| || | | Sbjct 325105 CGGCC-AGATCACGTCCATGCTCTTCTATTCCTGGGAGGCCGGGCTGAAGACTGGCGTCT 325163 Query 55911 ACTATCTGCGGACC 55924 |||| ||||| ||| Sbjct 325164 ACTACCTGCGCACC 325177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214850846400