Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq21 208 9e-49 seq30 150 2e-31 seq15 105 8e-18 seq7 89.7 6e-13 >seq21 Length=1141120 Score = 208 bits (230), Expect = 9e-49 Identities = 796/1228 (65%), Gaps = 29/1228 (2%) Strand=Plus/Minus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 |||||||||| ||||| |||||||| ||||| |||| ||| |||||||||| Sbjct 324661 CCACATGTCGAACTGCAGAATGCCCTCACTGGCCGGGCTGCCCGTGAAGGTCTCGTACGC 324602 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 ||||||| ||| |||||||| |||| | | || || || || || || Sbjct 324601 GCCCTCCTCCTTCGCCAGCTCCATCGACGACTCGACCGCAGCAAAGTAGATCGTTTCGAA 324542 Query 80661 GACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGA 80719 || || |||||| |||| |||||| | | | |||| || | ||| | |||| Sbjct 324541 GATCTCCGCGTTCAC-CCGCTGCGCCTCCGCCGAGACAAACGGCAGCCGCATGAGGATGA 324483 Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCG-C 80778 | |||| || || ||||| ||||||| | | | ||||||| |||| |||| || | Sbjct 324482 AGGCGTCCGCAAGCCCCTGCACGCCGAGGCCAACGGGGCGGTTGCGCATGTTACTGCGGC 324423 Query 80779 TCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACA 80838 || | || || ||||| |||| || || |||||||| ||||||||||| | Sbjct 324422 GCGCCGTCTCGACC-GGGTAGTAGTTGCGGTCAATAACGCGGTTGAGGTTGCGTGTGATC 324364 Query 80839 ACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGG---TTCCC--CTTC-ACAAAT 80892 | ||| || | || ||| || | | | ||| | | || || || Sbjct 324363 TGCTTTGTCACGGTGTAGAGAAGCTGGTGGTTCAGCTCGCGCTTCTCAACGTCGACGAAG 324304 Query 80893 GCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTT-CAGCATCTGTAAACTC 80951 ||| || | ||| || || |||||||| ||| ||| | | || | || |||| Sbjct 324303 CGCGGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGCGGCGAC-GTGTACTC 324245 Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 ||| || |||||||| | || || |||| ||||| || || || |||||||| ||||| Sbjct 324244 GACAATCTCCGTGCATAGGTTCGAGCACTTGATTGTGCCAAGATTCTTCTGGTTCGACTT 324185 Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071 | |||||| |||||||||||| ||| |||| || ||||||| ||| |||| || Sbjct 324184 GCTGTTGCATGCGTCCTTGTAGAGGATGAACGGCCCGCCCGTCTCGATCTGCGACTCCAG 324125 Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131 |||||| ||| | || | |||| || | |||| | ||| |||| | | || Sbjct 324124 GATGGCAAACCACACTTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTA 324065 Query 81132 CTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGT 81190 |||| |||| | || |||| |||| | || ||||| | |||||| || Sbjct 324064 GCGCTCGTAGAGCTGC-TCAAACTCCTCACCATAGCAATCGCTGAGGCCCGGGCACGTGT 324006 Query 81191 TAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGA 81250 | || |||||| ||| | ||| | | ||| | |||| || || |||| Sbjct 324005 TGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGCCTCATAAACAGATCTGGGA 323946 Query 81251 TCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCA 81310 |||| || || ||| ||||||||| |||| || || | ||| |||| | || Sbjct 323945 TCCACAGCGCATAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCA 323886 Query 81311 ACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCT 81370 | |||||| | | || ||| || ||||| ||||| ||||| ||||| | | |||| Sbjct 323885 GCAGCAGAAAGCCAAAGACGTCGGCGTGCCAGGGCTCGAGATAGACGGCAAAGGCGCCCT 323826 Query 81371 TGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAG 81427 |||| || ||||||||||| ||||| ||||| || ||| || || || | ||| | Sbjct 323825 TGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTG 323766 Query 81428 GGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCT 81487 | | || || | ||| ||||||||||| | || ||| ||||| | | Sbjct 323765 GCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGT 323706 Query 81488 TGCTGATTGAAAGACCGATGCCACCTGACCACTTTG-AAATCTGAGCACACCGGTTCATG 81546 || | || || ||||| || | || ||||| ||| || ||| |||| Sbjct 323705 TGTGCACGTGCAGGCCAATGCCGCC-GGCCGCTTTGCTGATCACCGCGCACTCCTTCAGC 323647 Query 81547 GTCTCATAAATTCCCTCGATGCTATCTTTTTTC-ATGTCA--AGCAAGAAACAGCTTGAC 81603 || || || || || |||||||| |||| ||| | | || || ||| | |||| | Sbjct 323646 GTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCT---C 323590 Query 81604 ATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGG 81663 || || || | | |||||| || || || || ||||| ||||| |||| | | Sbjct 323589 ATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCC 323530 Query 81664 TTTGACATCAGGTCATAGGTTTCCTTGACG--CGTGGAATATCGTCACCGTGAATACCGA 81721 || ||||| ||||| || || || ||| | || | ||| | |||||||| |||| Sbjct 323529 TTGGACATGAGGTCGTACGTCTCACGCACGTTCTTG--AGATCTGCGCCGTGAATGCCGA 323472 Query 81722 TAGCTACACGCATAAACATGTACTGGGG 81749 ||| |||||||| ||||| | ||| || Sbjct 323471 GAGCGACACGCATGAACATCTGCTGTGG 323444 >seq30 Length=2652413 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 1354229 AATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 1354170 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || ||||||| || || |||||||||||||| || || || ||||| Sbjct 1354169 CGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1354110 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || || || || ||||| || ||||| | || || || | ||||| || Sbjct 1354109 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAA 1354050 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || ||||| || Sbjct 1354049 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 1354002 >seq15 Length=568429 Score = 105 bits (116), Expect = 8e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64729 TTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAA 64788 |||||| ||||| || ||||||||||| ||||| ||||| | | |||||||| || Sbjct 410568 TTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAG 410509 Query 64789 AAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGG 64848 ||||| || ||||||||||| ||| |||| |||||||| ||||| || |||||||| Sbjct 410508 AAGCGCGGTCTGATGCCAGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGT 410449 Query 64849 CTCCAC 64854 || ||| Sbjct 410448 CTACAC 410443 >seq7 Length=595534 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 32052 GAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGC 32111 ||||||||| |||||||| |||||| | ||||| |||| | |||||||||||||| Sbjct 498262 GAAGGTGGCACAGCTGTCTGGCTACATCTCAGAGGCGTCGGCGTTCCACCACGGCGAGGC 498203 Query 32112 GTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAA 32171 ||||| |||| ||||| || || | || |||||||| ||| | || ||| | || Sbjct 498202 CTCGCTGCAGGAGACCATCGTGAAGATGGCGCAGAACTTCACCGGCGGCAACAACATCAA 498143 Query 32172 CTTACTCGAGCCATCTGGACAGTTTGG 32198 | | |||| |||| || ||||| || Sbjct 498142 CCTGCTCGTGCCAGAGGGCCAGTTCGG 498116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309202348160