Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq33 154 1e-32 >seq33 Length=500272 Score = 154 bits (170), Expect = 1e-32 Identities = 404/609 (66%), Gaps = 18/609 (3%) Strand=Plus/Minus Query 29860 CTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTT 29919 ||||||||| | ||| || | || |||| | |||||||||| ||||| || ||| | Sbjct 370279 CTCGAGCTGCGCCTTGAGGGCATCAACGTGGTTGCGGTAGACGTGGGCGTCGCCGAGGGT 370220 Query 29920 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29979 ||| |||| ||| || || || || || | | || || | | ||||| || | Sbjct 370219 GTGCACAAGCTCACCAGGCCGCAGACCCGTCGCCTTGGCAATGAGGATGGTGAGCAGCGC 370160 Query 29980 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 30039 |||| ||||||||| ||||| || || || |||||||| | ||| | |||||| | | Sbjct 370159 GTAGGAGGCGATGTTGAAGGGGACGCCAAGACCCATGTCGCACGAGCGCTGGTACAACAT 370100 Query 30040 ACACGAGAGCTCTCC---GTC---GCTCACGTAAAACTGACACATGGCGTGGCACGGAGG 30093 || || ||||| | ||| | ||||||| |||||| | ||||||||| || Sbjct 370099 GCAGGATAGCTCGCTCGTGTCTGTGTTCACGTAGAACTGAGCAAGCAAGTGGCACGGCGG 370040 Query 30094 AAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTC 30153 || ||||| || | ||||||||||| || | || ||| | ||| | Sbjct 370039 CAGCGCCATCTTTTGCAGCGCGCACGGGTTCCAGGCAGTGACTAGGAGGCGGCGGTCGTT 369980 Query 30154 TGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA-GT 30212 ||||| | ||||| |||||| | | | ||| |||||||| || ||| || Sbjct 369979 CGGGTTCGCCTTGATGGTCTCCACGATGAGCTTGATCTGGTCCACCCCT-TCGCCGTCGT 369921 Query 30213 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCG 30272 ||| ||| | || |||| ||||| ||||| || | ||||||||| ||||| || | Sbjct 369920 AGTTCGCCTCAAACCCCTTGTAATCTGCCCCGAAGTGGCGCCACTGGAAGCCGTAGACAG 369861 Query 30273 GTCCCAGGTC----TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTG 30328 | || ||||| ||| | ||| |||| ||||| | |||| | ||| || | Sbjct 369860 GGCCGAGGTCCATCTCCTTATTCTCTGTC----AAGCCGCGGCTGTCGAGAAACTCGCGC 369805 Query 30329 GAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGAC 30388 || |||||| |||||||||| | | |||| || | ||| | | | | || | Sbjct 369804 GAGCCGTTGCCGTCCCAGATGTGAATGTCCTTGTCTGCCAGCACCTGCGCACTCGTCTCC 369745 Query 30389 CCTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGT 30447 || | | |||||||||||||||||| ||| ||| | ||| ||||| | ||| ||||| Sbjct 369744 CCGCGCAGGAACCACAGCAGCTCCTCGCAC-ACGCCGCGCCAGAAGACACGCTTCGTCGT 369686 Query 30448 GAGGAGGGG 30456 || || || Sbjct 369685 CAGCAGCGG 369677 Score = 98.7 bits (108), Expect = 8e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 52826 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 52885 ||||||||||||||||||| || ||||| | ||||| |||||||||||||||||||| Sbjct 298813 CCAGGAGGACATGCCCTTCAACCGCGACGGCATCGTGCCGGACCTCATCATCAACCCCCA 298872 Query 52886 CGCCTTTCCCTCCAGGATGACCGT 52909 |||| |||||||| | ||||| || Sbjct 298873 CGCCATTCCCTCCCGCATGACAGT 298896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309568079456