Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq33 168 6e-37 >seq33 Length=500272 Score = 168 bits (186), Expect = 6e-37 Identities = 438/657 (67%), Gaps = 13/657 (2%) Strand=Plus/Plus Query 34147 GAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAA 34206 ||||| |||||| ||||| ||| ||| || | | |||||| | ||| || | | Sbjct 369598 GAAGGAGGACCGCACCGGCGTGGGCACCATCGGCCTCTTCGGCGCCCAGATGCGCTTCTC 369657 Query 34207 CCTTCGGGGCGAAT---TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGT 34263 ||| || | | | | ||||||||||||||||| ||||| | |||| |||||| Sbjct 369658 CCTACGCGACAACCGCCTGCCGCTGCTGACGACGAAGCGTGTCTTCTGGCGCGGCGTGTG 369717 Query 34264 CGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGG 34323 ||||||||||||||||||| || | |||| |||| | ||| ||| | | || Sbjct 369718 CGAGGAGCTGCTGTGGTTCCTGCGCGGGGAGACGAGTGCGCAGGTGCTGGCAGACAAGGA 369777 Query 34324 GGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATC 34383 | | |||||||||| |||| || || || ||||| |||| || || || || Sbjct 369778 CATTCACATCTGGGACGGCAACGGCTCGCGCGAGTTTCTCGACAGCCGCGGCTTGACAGA 369837 Query 34384 TCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGA 34443 ||||| ||| | ||||| |||||||| ||||||||| | ||||| ||||| || Sbjct 369838 GAATAAGGAGATGGACCTCGGCCCTGTCTACGGCTTCCAGTGGCGCCACTTCGGGGCAGA 369897 Query 34444 GTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGAT 34503 || |||| || ||| |||| || | || | ||||||| | || | | | Sbjct 369898 TTACAAGGGGTTTGAGGCGAACTACGACGGCGAAGGGGTGGACCAGATCAAGCTCATCGT 369957 Query 34504 CGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 || ||| | ||| |||||| | ||| | | || | | || ||||||||| Sbjct 369958 GGAGACCATCAAGGCGAACCCGAACGACCGCCGCCTCCTAGTCACTGCCTGGAACCCGTG 370017 Query 34564 GGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT---CG 34619 | || | ||||||||| || ||||||||| || ||| || |||||||| | Sbjct 370018 CGCGCTGCAAAAGATGGCGCTGCCGCCGTGCCACTTGCT-TGCTCAGTTCTACGTGAACA 370076 Query 34620 C-GA-ATG-GGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGG 34676 | || | | | ||||| |||||| | | || || || ||| | |||||||| | || | Sbjct 370077 CAGACACGAGCGAGCTATCCTGCATGTTGTACCAGCGCTCGTGCGACATGGGTCTTGGCG 370136 Query 34677 TGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT 34736 | || |||||||| || ||||| |||||||| | | || || || | || |||| Sbjct 370137 TCCCCTTCAACATCGCCTCCTACGCGCTGCTCACCATCCTCATTGC-CAAGGCGACGGGT 370195 Query 34737 -TGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCAC 34792 || ||||| ||||| ||||| || | || || || || |||||| |||||| Sbjct 370196 CTGCGGCCTGGTGAGCTTGTGCACACCCTCGGCGACGCCCACGTCTACCGCAACCAC 370252 Score = 168 bits (186), Expect = 6e-37 Identities = 438/657 (67%), Gaps = 13/657 (2%) Strand=Plus/Minus Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACC 6611 |||||| |||||| || || || || | || ||||| ||||| ||||| || ||| Sbjct 370252 GTGGTTGCGGTAGACGTGGGCGTCGCCGAGGGTGTGCACAAGCTCACCAGGCCGCAGACC 370193 Query 6612 CCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCC 6671 | || | || || || | | |||||||| ||||| || |||||||| || || | Sbjct 370192 CGTCGCCTTG-GCAATGAGGATGGTGAGCAGCGCGTAGGAGGCGATGTTGAAGGGGACGC 370134 Query 6672 CTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCC-CAT-TC-GCG- 6727 | | |||||||| | ||| || || || | | |||||| ||||| | | | || | | Sbjct 370133 CAAGACCCATGTCGCACGAGCGCTGGTACAACATGCAGGATAGCTCGCTCGTGTCTGTGT 370074 Query 6728 --ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTC 6784 |||||||| || ||| || ||||||||| || ||||||||| | || | | Sbjct 370073 TCACGTAGAACTGAGCA-AGCAAGTGGCACGGCGGCAGCGCCATCTTTTGCAGCGCGCAC 370015 Query 6785 GGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATC 6844 |||||||| || | | || | | ||| | |||||| ||| | ||| || | Sbjct 370014 GGGTTCCAGGCAGTGACTAGGAGGCGGCGGTCGTTCGGGTTCGCCTTGATGGTCTCCACG 369955 Query 6845 ACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCC 6904 | | || | ||||||| | || | || |||| ||| || |||| || || Sbjct 369954 ATGAGCTTGATCTGGTCCACCCCTTCGCCGTCGTAGTTCGCCTCAAACCCCTTGTAATCT 369895 Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964 ||||| ||||| | ||||||||| |||||||| ||||| | ||| ||||| | Sbjct 369894 GCCCCGAAGTGGCGCCACTGGAAGCCGTAGACAGGGCCGAGGTCCATCTCCTTATTCTCT 369835 Query 6965 GGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCC 7024 | || || || |||| ||||| || || || |||| |||||||||| | | || Sbjct 369834 GTCAAGCCGCGGCTGTCGAGAAACTCGCGCGAGCCGTTGCCGTCCCAGATGTGAATGTCC 369775 Query 7025 CGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACC 7084 | | ||| ||| | |||| |||| | || ||||||||||||||||||| | Sbjct 369774 TTGTCTGCCAGCACCTGCGCACTCGTCTCCCCGCGCAGGAACCACAGCAGCTCCTCGCAC 369715 Query 7085 ACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA---ATTCGCCCCGAAGGTTG 7141 ||||| |||| | ||||| ||||||||||||||||| | | | | || ||| | Sbjct 369714 ACGCCGCGCCAGAAGACACGCTTCGTCGTCAGCAGCGGCAGGCGGTTGTCGCGTAGGGAG 369655 Query 7142 TATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTC 7198 | || ||| | |||||| | | || ||| ||| ||||| |||||| ||||| Sbjct 369654 AAGCGCATCTGGGCGCCGAAGAGGCCGATGGTGCCCACGCCGGTGCGGTCCTCCTTC 369598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261458648960