Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq33 113 4e-20 >seq33 Length=500272 Score = 113 bits (124), Expect = 4e-20 Identities = 392/610 (64%), Gaps = 20/610 (3%) Strand=Plus/Minus Query 29632 CTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGT 29691 ||||||||| | | || | || ||||||| |||||||||| || || || ||||| Sbjct 370279 CTCGAGCTGCGCCTTGAGGGCATCAACGTGGTTGCGGTAGACGTGGGCGTCGCCGAGGGT 370220 Query 29692 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29751 ||| |||| ||| || || || || || | | || || | | ||||| || | Sbjct 370219 GTGCACAAGCTCACCAGGCCGCAGACCCGTCGCCTTGGCAATGAGGATGGTGAGCAGCGC 370160 Query 29752 GTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTG 29811 |||| ||||||||| ||||| || || || |||||||| | || | |||||| | | Sbjct 370159 GTAGGAGGCGATGTTGAAGGGGACGCCAAGACCCATGTCGCACGAGCGCTGGTACAACAT 370100 Query 29812 GCACGAGAGCTCTCC---GTC---GCTCACGTAAAACTGACACATGGCA-TGGCACGGAG 29864 ||| || ||||| | ||| | ||||||| |||||| || | | |||||||| | Sbjct 370099 GCAGGATAGCTCGCTCGTGTCTGTGTTCACGTAGAACTGAG-CAAGCAAGTGGCACGGCG 370041 Query 29865 GAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTT 29924 | || ||||| || | |||||||||||| || | || ||| | ||| | Sbjct 370040 GCAGCGCCATCTTTTGCAGCGCGCACGGGTTCCAGGCAGTGACTAGGAGGCGGCGGTCGT 369981 Query 29925 CTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCG-AG 29983 ||||| | ||||| |||||| | | | ||| |||| |||| || ||| | Sbjct 369980 TCGGGTTCGCCTTGATGGTCTCCACGATGAGCTTGATCTGGTCCA-CCCCTTCGCCGTCG 369922 Query 29984 TAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACC 30043 |||| | |||| || | ||||||||| ||||| || Sbjct 369921 TAGTTCGCCTCAAACCCCTTGTAATCTGCCCCGAAGTGGCGCCACTGGAAGCCGTAGACA 369862 Query 30044 GGTCCCAGG----TCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCT 30099 || || ||| ||||| | ||| |||| ||||| | |||| | ||| || | Sbjct 369861 GGGCCGAGGTCCATCTCCTTATTCTCTGT----CAAGCCGCGGCTGTCGAGAAACTCGCG 369806 Query 30100 GGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA 30159 || |||||| |||||||||| | | |||| || | ||| | | | | || Sbjct 369805 CGAGCCGTTGCCGTCCCAGATGTGAATGTCCTTGTCTGCCAGCACCTGCGCACTCGTCTC 369746 Query 30160 CCCTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCG 30218 ||| | | |||||||||||||||||| ||| ||| | ||| ||||| | ||| |||| Sbjct 369745 CCCGCGCAGGAACCACAGCAGCTCCTCGCAC-ACGCCGCGCCAGAAGACACGCTTCGTCG 369687 Query 30219 TGAGGAGGGG 30228 | || || || Sbjct 369686 TCAGCAGCGG 369677 Score = 102 bits (112), Expect = 7e-17 Identities = 113/147 (77%), Gaps = 8/147 (5%) Strand=Plus/Plus Query 53531 ATGGGCGACAAGTT-TGCATCCTTCACGGCGCAAAAGGGGACATGCGGAGCGGTCCTGAC 53589 || ||||||||||| |||| || ||||| |||||||| || ||| ||| | Sbjct 298754 ATCGGCGACAAGTTCTGCAGCCGCCACGGA-CAAAAGGGCACCAACGGCA---TCCAGTT 298809 Query 53590 TC---AGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCC 53646 || ||||||||||||||||| || ||||| | ||||| ||||||||||||||||| Sbjct 298810 TCGCCAGGAGGACATGCCCTTCAACCGCGACGGCATCGTGCCGGACCTCATCATCAACCC 298869 Query 53647 CCACGCCTTTCCCTCCAGGATGACGGT 53673 ||||||| |||||||| | ||||| || Sbjct 298870 CCACGCCATTCCCTCCCGCATGACAGT 298896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406162368380848