Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20arabica_20[genbank_20GCA_5F000410695.2_202016-09-16] 168 sequences; 31,269,090 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq33 149 5e-31 >seq33 Length=500272 Score = 149 bits (164), Expect = 5e-31 Identities = 405/610 (66%), Gaps = 20/610 (3%) Strand=Plus/Minus Query 27126 CTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGT 27185 ||||||||| | ||| || | || ||||| | |||||||||| ||||| || ||||| Sbjct 370279 CTCGAGCTGCGCCTTGAGGGCATCAACGTGGTTGCGGTAGACGTGGGCGTCGCCGAGGGT 370220 Query 27186 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 27245 ||| |||| ||| || || || || || | | || || | | ||||| || | Sbjct 370219 GTGCACAAGCTCACCAGGCCGCAGACCCGTCGCCTTGGCAATGAGGATGGTGAGCAGCGC 370160 Query 27246 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 27305 |||| ||||||||| ||||| || || || |||||||| | ||| | |||||| | | Sbjct 370159 GTAGGAGGCGATGTTGAAGGGGACGCCAAGACCCATGTCGCACGAGCGCTGGTACAACAT 370100 Query 27306 ACACGAGAGCTCTCCA---TC---GCTTACGTAAAACTGACATATGGCGTGGCACGGAGG 27359 || || ||||| | || | | ||||| |||||| | ||||||||| || Sbjct 370099 GCAGGATAGCTCGCTCGTGTCTGTGTTCACGTAGAACTGAGCAAGCAAGTGGCACGGCGG 370040 Query 27360 AAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTC 27419 || ||||| || | ||||||||||| || | || ||| | ||| | Sbjct 370039 CAGCGCCATCTTTTGCAGCGCGCACGGGTTCCAGGCAGTGACTAGGAGGCGGCGGTCGTT 369980 Query 27420 TGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA-GT 27478 ||||| | ||||| |||||| | | | ||| |||||||| || ||| || Sbjct 369979 CGGGTTCGCCTTGATGGTCTCCACGATGAGCTTGATCTGGTCCACCCCT-TCGCCGTCGT 369921 Query 27479 AGTCTACCCTCATGTCCGT-GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACC 27537 ||| | ||||| || | ||| ||||| ||||| || | ||| ||||| ||||| || Sbjct 369920 AGT-TCGCCTCAAACCCCTTGTAATCTGCCCCGAAGTGGCGCCACTGGAAGCCGTAGACA 369862 Query 27538 GGTCCCAGGTC----TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCT 27593 || || ||||| ||| | ||| |||| ||||| | |||| | ||| || | Sbjct 369861 GGGCCGAGGTCCATCTCCTTATTCTCTGTC----AAGCCGCGGCTGTCGAGAAACTCGCG 369806 Query 27594 GGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA 27653 || |||||| |||||||||| | | |||| || | ||| | | | | || Sbjct 369805 CGAGCCGTTGCCGTCCCAGATGTGAATGTCCTTGTCTGCCAGCACCTGCGCACTCGTCTC 369746 Query 27654 CCCTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCG 27712 ||| | | |||||||||||||||||| ||| ||| | ||| ||||| | ||| |||| Sbjct 369745 CCCGCGCAGGAACCACAGCAGCTCCTCGCAC-ACGCCGCGCCAGAAGACACGCTTCGTCG 369687 Query 27713 TGAGGAGGGG 27722 | || || || Sbjct 369686 TCAGCAGCGG 369677 Score = 98.7 bits (108), Expect = 7e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 48606 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 48665 ||||||||||||||||||| || ||||| | ||||| |||||||||||||||||||| Sbjct 298813 CCAGGAGGACATGCCCTTCAACCGCGACGGCATCGTGCCGGACCTCATCATCAACCCCCA 298872 Query 48666 CGCCTTTCCCTCCAGGATGACCGT 48689 |||| |||||||| | ||||| || Sbjct 298873 CGCCATTCCCTCCCGCATGACAGT 298896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506443434008