Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000227135.2_202011-12-13] 36 sequences; 32,444,968 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq22 113 1e-19 seq27 105 1e-17 seq23 84.2 5e-11 >seq22 Length=704761 Score = 113 bits (124), Expect = 1e-19 Identities = 291/441 (66%), Gaps = 7/441 (2%) Strand=Plus/Minus Query 230203 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 230262 || || || ||| | ||||||||| |||||||| | || |||||| ||| ||| Sbjct 499499 GTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGT 499440 Query 230263 GTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATC 230320 ||||||| || || || || | |||||| ||||| ||||||||||| || || Sbjct 499439 CTGATGCCGGGGCTGACGTTCAGC--AACGAGCTCATCTCGCGCGACGAGGGCCTACACA 499382 Query 230321 AACAGTTCGGCGAGCTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAGACGG 230377 | |||| || |||| || | || || ||||||| || |||| | Sbjct 499381 CGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG 499322 Query 230378 TCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTC 230437 | | ||||| || || || | | ||| |||||||| || ||||| | | Sbjct 499321 TGCTGGAGATCATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGC 499262 Query 230438 CATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCG 230497 | || || |||||||||||||| || || |||| ||||||||||| ||||| || | Sbjct 499261 CGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCGCAGTACATCGAGTTCGTCGCGG 499202 Query 230498 ACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCAT 230557 |||| | | || | || || | ||||| ||| ||| | | | || || | | Sbjct 499201 ACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCGCTCGACGCAGCCGTTCGACT 499142 Query 230558 TTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACT 230617 | |||||| | || ||||| || || || || ||||||||||| ||| | || | || | Sbjct 499141 TCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTCGAGAAGAGGGTGGGGGAGT 499082 Query 230618 ATCAGAGGCCTGGTGTGATGA 230638 | |||| | | || ||||||| Sbjct 499081 ACCAGAAGGCCGGCGTGATGA 499061 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||||| || ||||| | || || || |||||||||||||| || || |||| Sbjct 498831 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCG 498772 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | | || | || || | ||||| ||| Sbjct 498771 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTAC 498712 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | || || | || |||||| | || ||||| || || || || |||||| Sbjct 498711 CGCTCGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTC 498652 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || || |||| | |||| ||||||| Sbjct 498651 TTCGAGAAGAAGGTGGGGGAGTACCAGAAGGCTGGCGTGATGA 498609 >seq27 Length=1024085 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||||| || ||||| | || || || |||||||||||||| || || |||| Sbjct 810774 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCG 810715 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | | || | || || | ||||| ||| Sbjct 810714 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTAC 810655 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | || || | || |||||| | || ||||| || || || || |||||| Sbjct 810654 CGCTCGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTC 810595 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| | || | || || |||| | | || ||||||| Sbjct 810594 TTCGAGAAGAGGGTGGGGGAGTACCAGAAGGCCGGCGTGATGA 810552 >seq23 Length=783272 Score = 84.2 bits (92), Expect = 5e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 165715 TCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCAC 165774 ||||||||||| |||||||||| | ||||||| || ||||||||||||||||||||||| Sbjct 230321 TCTAGCTCAGTTGGTAGAGCGCGTGGCTTTTAACCTCGTGGTCGTGGGTTCGAGCCCCAC 230380 Query 165775 G 165775 | Sbjct 230381 G 230381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823512078680