Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000227135.2_202011-12-13] 36 sequences; 32,444,968 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq28 349 3e-91 seq22 201 1e-46 seq31 96.9 3e-15 seq9 96.9 3e-15 seq36 95.1 1e-14 >seq28 Length=1171725 Score = 349 bits (386), Expect = 3e-91 Identities = 557/792 (70%), Gaps = 8/792 (1%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| ||||| || ||||| || ||| ||| | | ||||||||||| ||||| || Sbjct 331367 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGTGGCGACGTGTACTCGACAATCTCC 331308 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || ||||| || ||||| |||||||| | ||| ||||||| || | ||||| Sbjct 331307 GTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCAT 331248 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | ||||||||||| | | ||||| |||||||||| ||| ||||| | ||| || | Sbjct 331247 GCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATAGCAAAC 331188 Query 23201 CACATAGTCTGAGCGTGAACACGTCGC-ACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 |||| ||| || || | |||| ||| | ||| || |||||| | ||| Sbjct 331187 CACACCTCCTGGGCCTGGAT-CGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTA 331129 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC-GGGCGATTGCATCGGACACA 23318 | | ||||| || |||| || || ||| || || |||| || | ||| || Sbjct 331128 GAGCCGCTCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTGT-TGGGATCCA 331070 Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 | || ||||| | || ||| || ||||||||||| ||||| || ||||| || | Sbjct 331069 TCAGCGTCCACTTCCCCTCGCTTTTCACACGTCTCATAAACAGATCTGGGATCCACAGCG 331010 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 ||||||| || |||||||||||| || ||||| || ||||| ||||| || || Sbjct 331009 CGTAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAA 330950 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 || | || ||||| || ||||| |||||||| || ||||| || |||||| | |||| Sbjct 330949 AGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTAC 330890 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 ||||||||| || ||||| ||||| ||||||||| | || | |||||| |||||||| | Sbjct 330889 CGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCC 330830 Query 23559 CGTTGGACGCGCCG--CCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAAC 23616 |||| |||| |||| | || || || | || || || | |||||| || Sbjct 330829 CGTTCGACGTGCCGTTCGTA--CCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCAC 330772 Query 23617 GTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTA 23676 ||| | ||| ||||| ||| ||| ||| |||| || || | ||||| |||||||| Sbjct 330771 GTGCAGACCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCTTCAGCGTGTCGTA 330712 Query 23677 GATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTT 23736 |||||| ||||||||||| || || | ||| |||| ||| ||||| |||||||| || Sbjct 330711 GATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTT 330652 Query 23737 GGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAG 23796 || || |||| || || |||||| ||||||| || ||| | || || ||||| || Sbjct 330651 CGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGACATAAG 330592 Query 23797 ATTGTACGTGTC 23808 | |||||| || Sbjct 330591 GTCGTACGTCTC 330580 Score = 89.7 bits (98), Expect = 5e-13 Identities = 282/432 (65%), Gaps = 9/432 (2%) Strand=Plus/Minus Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGG 22512 |||||| || | ||||||||| || || ||||| ||| ||||| || ||||| || Sbjct 331941 GTTCACAACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTCGAGGTGAAGGG 331882 Query 22513 TTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAA 22572 ||||| | || || || || || ||||| | ||| || ||||| ||||| || || | Sbjct 331881 CTCGAAGCACTCGTTATTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAAC 331822 Query 22573 CAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCA 22632 ||| || ||||| | || ||| || | || |||||| | | ||||||||| Sbjct 331821 CAGCAGGGAGTTGCGCATGCCCACCTGCATCACCTTCTCCTTGAGGCTGGCCCAGTCCCA 331762 Query 22633 CAGATCGGAC---GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGC 22689 || || ||| | | || | |||||| ||| | |||| | ||| || || Sbjct 331761 GCGACCGCTGTTGGGCCGCGCGTTCTTCCACATGTCGAACTGCAGAATGCCCTCGCTGGC 331702 Query 22690 CGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGC-TCGCCT 22748 ||||||||| | | || |||||||| |||| | || || || || | || || Sbjct 331701 CGGGCTGCCCGTGAAGGTCTCGTACGGGCCATCCTCCTTCGCCAGCTC-CATCGACGACT 331643 Query 22749 CCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGC 22808 | | || | | || || || |||||||| | ||||| | || ||| | ||| Sbjct 331642 CGACAGCAGCAAAGTAGATCGTTTCGAAGATCTCTGCGTTCA--CCCGCTGCGCCTCCGC 331585 Query 22809 --TTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACC 22866 | |||||| ||||| | | ||| |||||||| | ||||| ||||| | || Sbjct 331584 CGAGACAAACGGCAGTCGCATGAGGATGAAGGCGTCCGCGAGCCCCTGCACGCCGAGGCC 331525 Query 22867 GATCGGTCGGTT 22878 ||| || ||||| Sbjct 331524 GATGGGGCGGTT 331513 >seq22 Length=704761 Score = 201 bits (222), Expect = 1e-46 Identities = 510/762 (67%), Gaps = 18/762 (2%) Strand=Plus/Minus Query 57678 TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTG 57737 || || || |||||| | || || ||||||| ||| || || || | ||||||| | Sbjct 499811 TTCATCAAGCACGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTT 499752 Query 57738 GTCGAAAGATTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTC 57795 | || | | |||| || | ||| | ||| | |||||| | || ||||| || | Sbjct 499751 G-CGCA-GCGCTTCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCC 499694 Query 57796 AAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGA 57855 | || || || ||| | || || || | ||| || | || | || |||||| | | Sbjct 499693 AGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACATCA 499634 Query 57856 AGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCG-ATCGCC 57914 ||||| ||| ||||| | ||||||| |||| || | || || |||| | ||| Sbjct 499633 CGGACAGCGAGGAGAAGCTGCGACTGTTGCACGCAATACAGACGAT-CCCGTGCATCCAA 499575 Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 |||||||| |||||| | | ||||| ||| | || | ||| ||| || Sbjct 499574 AAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGCAGCGCGAGCT--TTCAG-GAGCGG 499518 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTC-GGGCAGCTTTGCGGCAATATT 58033 || |||| || ||||| || || || || |||||||| ||| | | |||| | | || Sbjct 499517 CTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCG-CGCTGTT 499459 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| ||||||| ||||| |||||||| || |||||||| ||||||||| | || ||||| Sbjct 499458 CTGGCTGAAGAAGCGCGGTCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCG 499399 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT---ACTCTCACATTGTCAATAA 58150 ||||||||| || || || || || || ||||| ||| |||| ||||| | || Sbjct 499398 CGACGAGGGCCTACACACGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAA 499339 Query 58151 ACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTT 58210 | | |||| || ||| | |||| || ||| || ||||| ||||| ||||| Sbjct 499338 GCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTGGATGCGGTGAACATCGAGCGCGAGTT 499279 Query 58211 TGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTA 58270 || ||| || || |||||| || | || |||||| || ||||| | |||| Sbjct 499278 CATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCGCAGTA 499219 Query 58271 CATTGAGTTTGTTGCCGACAGACTTTTG--CTCGAACTGATTGGAGAGCGTCATTACAAC 58328 ||| ||||| || || ||| | || || ||| | | ||||| || ||| | Sbjct 499218 CATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGA--AGCACTACCGC 499161 Query 58329 ACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTC 58388 ||| | ||||| || || ||| | |||||||||| ||||||| || ||||| ||| Sbjct 499160 TCGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTC 499101 Query 58389 GaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGC 58430 || || | || | || || || || ||||||||||||| Sbjct 499100 GAGAAGAGGGTGGGGGAGTACCAGAAGGCCGGCGTGATGAGC 499059 >seq31 Length=1531288 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||| | | || || || ||| Sbjct 938319 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 938260 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || || || ||||||||| ||| | ||||| ||||| Sbjct 938259 CGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 938200 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || ||||| ||||| ||| |||| || Sbjct 938199 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGA 938164 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||| | | || || || ||| Sbjct 938808 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 938749 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || | || ||||||||| ||| | ||||| ||||| Sbjct 938748 CGACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 938689 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || ||||| ||||| ||| |||| || Sbjct 938688 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGA 938653 >seq9 Length=588727 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||| | | || || || ||| Sbjct 369776 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 369717 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || || || ||||||||| ||| | ||||| ||||| Sbjct 369716 CGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 369657 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || ||||| ||||| ||| |||| || Sbjct 369656 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGA 369621 >seq36 Length=2713248 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| |||||| | | || || || ||| | Sbjct 1386070 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 1386011 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| ||| | ||||| |||||| Sbjct 1386010 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1385951 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| || || ||||| ||||| ||| |||| || Sbjct 1385950 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGA 1385916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766199405120