Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000227135.2_202011-12-13] 36 sequences; 32,444,968 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq22 158 2e-33 seq28 132 7e-26 >seq22 Length=704761 Score = 158 bits (174), Expect = 2e-33 Identities = 391/584 (67%), Gaps = 16/584 (3%) Strand=Plus/Minus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||| || || ||| ||| |||||||| ||| | |||||| || || || | | Sbjct 499944 CCTCTTCCCAATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCAT 499885 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 |||||||| || ||| |||| ||| ||| ||| || | || |||| | | ||| Sbjct 499884 CTGGACGGTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAATGC---TGAA 499828 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || ||||| | || || |||| | | |||||||| |||||| ||| || || Sbjct 499827 CGACGGGGAGCGGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCCGGCAGCGACGGCAT 499768 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 |||| ||| ||||| | || ||| || ||| | ||||||| | || | Sbjct 499767 AGTCATCGAGAATCTTGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCAGAGGCG-CGCG 499709 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||| ||||| | ||||| |||||| | |||||||| | ||||||| ||| Sbjct 499708 CGTTCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGC 499649 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACG 125351 | |||| |||||| | || | || | | || | || || ||||||| | ||| Sbjct 499648 TGGACACGTACAT-CACGGACAGCGAGGAGAAGCTGCGACTGTTGCACGCAATACAGACG 499590 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG--ATGACGACAAGT 125409 | |||| || | || ||||| | |||| | |||||||||| | | | || Sbjct 499589 ATCCCGTGCATCCAAAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGCAGCGCGAGC 499530 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGT 125468 ||| || | ||| | | || ||||| || |||||||| |||||||| |||| Sbjct 499529 TTTCAGGAGCGG-----CTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGT 499475 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 ||| |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| Sbjct 499474 CGTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGGCTGACGTTCAGC 499416 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| | || || || ||||||||||||||| ||||| || Sbjct 499415 AACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGACTTCGC 499372 >seq28 Length=1171725 Score = 132 bits (146), Expect = 7e-26 Identities = 319/476 (67%), Gaps = 10/476 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||| ||| || ||||| | |||||||| | || || |||||||| ||| Sbjct 330880 CAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTATCTCGAGCCCTGGCACGCTGAC 330939 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAA---AACTCTGGCTTTGAAGAGGCACGAGCCAGG 96992 || |||| |||| | | ||| ||| ||| | || || || || ||| | Sbjct 330940 GTCTTTGGCTTTCT---GCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCCCGC 330996 Query 96993 GACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGC 97052 ||| | || || || || ||| | |||||| |||| |||| || || || || || Sbjct 330997 GACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTATGAGACGTGTGAAAAGCGAGGGG 331056 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | |||| || ||| ||| || ||| || ||||| |||||||| || |||||| Sbjct 331057 AAGTGGACGCTGATGGATCCCAACACGTGCCCGGGTCTCAGCGATTGCTATGGTGAAGAG 331116 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGT-GAGACGAGTCGATGC 97171 |||||| ||| | ||||||| |||||||| ||| |||||| || | || Sbjct 331117 TTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTCAAGACGA-TCCAGGC 331175 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | || ||||| || ||| || | ||||| | ||||| ||| |||| | | || Sbjct 331176 CCAGGAGGTGTGGTTTGCTATCCTGGAGTCTCAGATCGAGACGGGAGGGCCGTTCGTCCT 331235 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCA-ACGCCACTTGGGCACCATCAAGGGCT 97290 ||||||||| | || |||| ||||| | | ||| ||||| |||||| ||| Sbjct 331236 CTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTT-GGCACGATCAAGTGCT 331294 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 | || || |||||||| ||||| |||||| | || || | |||||||| || ||| Sbjct 331295 CGAACCTATGCACGGAGATTGTCGAGTACACGTCGCCACAGGAGACGGCGGTGTGC 331350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058866523360