Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000227135.2_202011-12-13] 36 sequences; 32,444,968 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq28 309 6e-79 seq22 289 5e-73 seq27 122 2e-22 >seq28 Length=1171725 Score = 309 bits (342), Expect = 6e-79 Identities = 1129/1730 (65%), Gaps = 73/1730 (4%) Strand=Plus/Minus Query 243735 CCACGCTGAACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTC 243793 ||||| |||||| || || || || || |||||||||| | ||||||||| | ||| ||| Sbjct 332284 CCACGGTGAACTTGATCGCGTCCGCCG-CGGCCTTGGTGCGCAGGTAGTAGACGCCAGTC 332226 Query 243794 TTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTT 243853 || |||||| |||| | || | |||||| ||| | || | ||| | Sbjct 332225 TTCAGTCCAGCTTCCCAGCAATAGAAGAGCATGGACGTGATCTGG-----CCGGAGGTGG 332171 Query 243854 GGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGC 243913 || || | | || |||||||| || ||||| |||||| | | | | | || Sbjct 332170 GGCTC----TGG---AGGAAGAGGTTCAGCGACTGCGACTGGTCAATGTACTGGCCGCGG 332118 Query 243914 TCTGCG-GCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972 || ||| |||||| || || | ||| | ||||| || | ||| ||| | Sbjct 332117 TC-GCGTGCCATGTCTATCAGCTTGCGCTGTGGAATCTCCCACACGGTCCGGTAAAGCTC 332059 Query 243973 CTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTG 244032 | | |||| || || | || | || | | | ||||| |||| | ||||| || Sbjct 332058 CCTCAGGTCGTCCGGCATGCCGTTAATAGTGAGGATAGAGCCGTTGTAGGAGATGATCTC 331999 Query 244033 GGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCG-CCTCGACCAGGTGCCTGT 244091 | | ||||| |||||||| || || | |||| | | || ||| |||| | ||| Sbjct 331998 GTTCCGCATCGACTCGTTCCATAGACC-ACGCGCAATAAGGTCCATGACGAGGTACTTGT 331940 Query 244092 TCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCT 244151 |||| || | ||||| || |||||| ||||| ||||| ||| | ||| |||| Sbjct 331939 TCACAACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTCGAGGTGAAGGGCT 331880 Query 244152 CGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCA 244211 ||| || ||| | ||||| || ||||||| ||| ||| || |||||||| | |||| Sbjct 331879 CGAAGCACTCGTTATTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAACCA 331820 Query 244212 GCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTC--TGAGCTCGTTCCAGTCCC 244268 |||| ||| | || ||| | ||| || | || |||| | |||||||| Sbjct 331819 GCAGGGAGTTGCGCATGCC---CACCTGCATCACCTTCTCCTTGAGGCTGGCCCAGTCCC 331763 Query 244269 ACATGCCCGAGA-GGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 | || | || || |||||| ||||||||| |||||||| | |||| | Sbjct 331762 AGCGACCGCTGTTGGGCCGCGCGTTCTT----CCACATGTCGAACTGCAGAATGCCCTCG 331707 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCT- 244386 ||| | ||||||||| | ||||| ||| || || || || ||||||| || | Sbjct 331706 CTGGCCGGGCTGCCCGTGAAGGTCTCGTACGGGCCATCCTCCTTCGCCAGCTC-CATCGA 331648 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT-GTTCATGTCGCGG-GCC 244444 | |||| || || ||||||| || ||||||||| ||| ||||| ||| | ||| Sbjct 331647 CGACTCGACAGCAGCAAAGTAGATCGTTTCGAAGATC-TCTGCGTTCACC-CGCTGCGCC 331590 Query 244445 TT-GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503 | |||| || || || | | ||| | |||||| |||| || || ||||||||||| Sbjct 331589 TCCGCCG-AGACAAACGGCAGTCGCATGAGGATGAAGGCGTCCGCGAGCCCCTGCACGCC 331531 Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG-CATGGCTTCGGGCACGGGGTAAAAGT 244562 || ||||||||| | || ||| |||| ||| | | | || | || ||||| ||| Sbjct 331530 GAGGCCGATGGGGCGGTTGCGCATGTTACTGCGGCGCGCCGTCTCG-ACCGGGTAGTAGT 331472 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCG--GACGACGTCGGCCAGCAG 244620 ||| ||| || ||| ||| ||||| || |||||| ||| | | ||| | || || Sbjct 331471 TGCGGTCAATAACCCGGTTTAGGTTACGTGTGATC-TGCTTTGTC-ACGGTGTAGAGAAG 331414 Query 244621 CTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGC 244680 ||| || | |||| || || ||| | || | || || || Sbjct 331413 CTGGTGGTTGAACTCACGCTTCTCAACGTCGACG-----------AAGCGCGGC-AGCGC 331366 Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740 || | ||| |||||||| || ||| ||||| | ||||||| ||||||||| || Sbjct 331365 GATGGAGGCGAGGTTGCACACCGCCGTCTCCTGTGGCGACGTGTACTCGACAATCTCCGT 331306 Query 244741 GCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 ||| ||||| ||||||||| ||||| || | || || || |||||| |||||| || Sbjct 331305 GCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGC 331246 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860 |||||||||||| | ||| ||||| || ||||||| ||| | | |||| ||| Sbjct 331245 GTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATAGCAAACCA 331186 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAG 244920 | ||| |||| || |||| || | |||||| | ||||||||| ||| || Sbjct 331185 CACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAG 331126 Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAG 244980 ||| ||||| || || ||| || || ||||||| || ||| || Sbjct 331125 CCGCTCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTGGGATCCATCAG 331066 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCC-TCTGCATGAAGAGGTCGGGGATCCAGAGGGCCT 245039 |||||| || || || || | ||| ||| || || || |||||||| || || | Sbjct 331065 CGTCCACTTCCCCTCGCTTTTCACACGTCT-CATAAACAGATCTGGGATCCACAGCGCGT 331007 Query 245040 GGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGT 245099 ||||||||| | || | ||| || || || ||||| ||||| || |||| Sbjct 331006 AGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGC 330947 Query 245100 CAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGC 245159 |||||||||| ||||||||||||| | ||||| |||| |||||| ||||| || Sbjct 330946 CAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGC 330887 Query 245160 CTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATG 245215 | |||||||||| | | || ||| |||||||| ||| || | ||||| | Sbjct 330886 CGCCCTGGTCCA----CGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGC 330831 Query 245216 CCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATG 245275 ||||| || |||||| || || |||||| |||| ||| | | || || || || Sbjct 330830 CCGTTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCC--GCCGC-GCGGATGTTG-TG 330775 Query 245276 GACATG----CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTC 245331 || || || | |||||||| ||| ||| | ||| || ||| | ||||| Sbjct 330774 CACGTGCAGACCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCTTCAGCGTGTC 330715 Query 245332 TGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGG 245391 ||||| || |||||||| |||| | ||| ||||| ||| || || || Sbjct 330714 GTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGG 330655 Query 245392 CTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGC 245441 ||| ||| ||| | ||| || || || ||| |||||||||| ||| ||| Sbjct 330654 CTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGC 330605 >seq22 Length=704761 Score = 289 bits (320), Expect = 5e-73 Identities = 597/871 (69%), Gaps = 23/871 (3%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| ||||||||| || ||||||| || | || || || |||||| | Sbjct 499934 ATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTG 499875 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGA-ACGAAAA 42403 |||||||| ||||||| ||| |||| | | ||||| || || |||| ||| | Sbjct 499874 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGG---CAATG-CTGAACGACGGGGA 499819 Query 42404 GTTT---TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 | ||| |||| || | || ||||||||||||| | ||||||||||||| || Sbjct 499818 GCGGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGA 499759 Query 42461 GAACCTGGC-CACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACG 42519 ||| || || || | | ||||||| || ||| || ||||||||| ||||||| Sbjct 499758 GAATCTTGCGCAGC-GCTTCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACG 499700 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGT 42579 | |||||| | || |||||| | ||||| ||| |||| | ||||| |||||| Sbjct 499699 GGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGT 499640 Query 42580 ACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 ||||| ||| || ||| | ||||| | || || ||||||| || |||| Sbjct 499639 ACATCACGGACAGCGAGGAGAAGCTGCGACTGTTGCACGCAATACAGACGATCCCGTGCA 499580 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCG 42699 || | ||||||||||| ||||| | ||||||| ||| || || | | ||| | | Sbjct 499579 TCCAAAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGCAGCG-CG-AGCTTTCAG-G 499523 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 || ||||| | | |||| |||| || |||||||| ||||| || || | ||| | | Sbjct 499522 AGCGGCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGC 499463 Query 42760 TCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 | |||||||| ||| || ||| | |||||| || || || ||| ||||| |||||| Sbjct 499462 TGTTCTGGCTGAAGAAGCGCGGTCT-GATGCCGGGGCTGACGTTCAGCAACGAGCTCATC 499404 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT---TCTCGAGCCACCTC 42875 | |||||||| || || | |||||| || ||||| |||| |||| ||| || Sbjct 499403 TCGCGCGACGAGGGCCTACACACGGACTTCGCATGCCTGCTGTACAACTCG---CACATC 499347 Query 42876 AGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAG 42935 | |||||||| || ||||| || | || |||||| ||| || ||| | |||||| Sbjct 499346 AAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTGGATGCGGTGAACATCGAG 499287 Query 42936 AAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATG 42995 |||||| || | ||||||| ||| ||| | ||||||||| || || ||| Sbjct 499286 CGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATG 499227 Query 42996 TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCT 43054 |||||||| ||| |||||| |||| || || ||| | || || | | Sbjct 499226 GCGCAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAG-CA 499168 Query 43055 CTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAA 43114 |||| | || || || |||||||| ||||||| |||||| || ||||||| || || Sbjct 499167 CTACCGCTCGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAA 499108 Query 43115 CTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||| ||||||||| | || | || |||||| Sbjct 499107 CTTCTTCGAGAAGAGGGTGGGGGAGTACCAG 499077 >seq27 Length=1024085 Score = 122 bits (134), Expect = 2e-22 Identities = 209/301 (69%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| ||||||||| || ||||||| || | || || || |||||| | Sbjct 811473 ATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTG 811414 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 |||||||| ||||||| ||| |||| | | ||||| | ||| || || | Sbjct 811413 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAACGCTGAACGACGGGGAGCGG 811354 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 ||| |||| || | || ||||||||||||| | ||||||||||||| ||||| Sbjct 811353 CACTTCATCAAGCACGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAAT 811294 Query 42465 CTGGC-CACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 || || || | | ||||||| || ||| || ||||||||| |||||||| || Sbjct 811293 CTTGCGCAGC-GCTTCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTT 811235 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 |||| | || |||||| | ||||| ||| |||| | ||||| |||||||||| Sbjct 811234 CCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACAT 811175 Query 42584 C 42584 | Sbjct 811174 C 811174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338775047360