Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000227135.2_202011-12-13] 36 sequences; 32,444,968 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq22 307 1e-78 seq27 138 1e-27 seq36 132 5e-26 seq31 131 2e-25 seq9 131 2e-25 >seq22 Length=704761 Score = 307 bits (340), Expect = 1e-78 Identities = 645/936 (69%), Gaps = 34/936 (4%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || || || || |||||| | ||||| || || || ||||| |||| Sbjct 499062 CATCACGCCGGCCTTCTGGTACTCCCCCACCCTCTTCTCGAAGAAGTTCGTTTTGCCCTG 499121 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGT---GCC 132707 || || || | | ||| || || || || | | | | ||||||||| ||| Sbjct 499122 CAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCGAGCGGTAGTGCTTCTCCTCGCC 499181 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 || | | | || ||||||| ||| || |||||||||||||| |||| ||| | | ||| Sbjct 499182 GAGC--GAC-ACCAGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGC 499238 Query 132767 AATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCG 132825 | | | || | ||| |||||||||||||| ||| || ||| || |||||||| Sbjct 499239 GTTCATG-CCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTC 499296 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT-CGGCCGTTGCACCAAATGC-- 132882 ||||| || || ||| ||| |||||| | |||| | || ||| | ||| Sbjct 499297 ACCGCATCCACGATGATCTCCAGCACGCGCTC-GCGCGGCAGCTTGTGCTTGATGTGCGA 499355 Query 132883 -TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTT 132941 ||| ||| || ||| || ||||| || | ||||||||| | || ||||| ||||| Sbjct 499356 GTTGTACAGCAGGCATGCGAAGTCCGTGTGTAGGCCCTCGTCGCGCGAGATGAGCTCGTT 499415 Query 132942 GCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 |||||| |||| || ||||| || ||||| || || ||||| || | ||| ||| Sbjct 499416 GCTGAACGTCAGCCCCGGCATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGA 499475 Query 133002 GCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC-ACCAGGCGCTCGCCGAACGTGG 133060 || |||||||| | |||||| || || || |||||| | ||| ||||| | ||| | Sbjct 499476 CCCGGAAAAGAAAATGCCCTCCACCGCGGC-AAAGCCGATCAGCCGCTC-CTGAAAG--- 499530 Query 133061 CTT-CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATC 133119 || | |||| ||||||| |||| ||||| || ||||| | || || |||||| ||| Sbjct 499531 CTCGCGCTGCTCCCGATCCACCGCACAGCCCACTCCGCCTTCTTTTGGATGCACGGGATC 499590 Query 133120 GTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGAT 133178 || | || |||| ||||| || || ||||| || | | || | ||| ||||| | Sbjct 499591 GTCTGTATTGCGTGCAACAGTCGCAGCTTCTCCTC-GCTGTCCGTGATGTACGTGTCCAG 499649 Query 133179 GAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCA 133238 || || ||| | |||||||| | ||||||||| | || || ||||| || Sbjct 499650 CAGCACAGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGC 499709 Query 133239 CCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGAT 133298 |||||||| ||||| ||| || ||| |||| | ||||| ||| |||| || Sbjct 499710 GCGCGCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTAT 499769 Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358 |||||||||| ||||||| ||||| ||||||||||||||||| || ||||| |||||| Sbjct 499770 GCCGTCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTT 499829 Query 133359 CAAGCGCT-CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACG 133417 | ||| | ||||||| | |||| ||| |||||| | |||||| || ||||| | Sbjct 499830 C-AGCATTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCA----G 499884 Query 133418 ACGC--CTCGGCT--TTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATC 133473 | || ||| || | |||||| | | ||| ||||| || || || || || | Sbjct 499885 ATGCAGCTCTCCTGCTCCTTGTACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGG 499944 Query 133474 ACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || | ||| | ||||| || || |||||||||| Sbjct 499945 ACGTAGCGGAGCGGGTTCTCCTGCTGCAGCGGCTCC 499980 Score = 125 bits (138), Expect = 7e-24 Identities = 216/309 (70%), Gaps = 10/309 (3%) Strand=Plus/Plus Query 133206 GTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTG 133265 ||||||||| | || || ||||| || |||||||| ||||| ||| || Sbjct 500133 GTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCTTCACGTCGCT 500192 Query 133266 AGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAG 133325 ||| |||| | ||||| ||| |||| |||||||||||| ||||||| ||||| || Sbjct 500193 CATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAGAAGGCAAG 500252 Query 133326 CACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCT-CCCAGTCGCGCGTGTCCT 133384 ||||||||||||||| || ||||| ||||||| ||| | ||||||| | |||| | Sbjct 500253 CACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTC-AGCATTGCCCAGTCCTTCATGTCGT 500311 Query 133385 TGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGC--CTCGGCT--TTTTTGTACATA 133440 || |||||| | |||||| || ||||| || || ||| || | |||||| | Sbjct 500312 TGCCCAGGTCGATCTCCTCCACCGTCCA----GATGCAGCTCTCCTGCTCCTTGTACTTG 500367 Query 133441 CTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAAC 133500 | ||| ||||| || || || || || | || | ||| | ||||| || || | Sbjct 500368 CGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGGAGCGGGTTCTCCTGCTGC 500427 Query 133501 AGCGGCTCC 133509 ||||||||| Sbjct 500428 AGCGGCTCC 500436 Score = 95.1 bits (104), Expect = 1e-14 Identities = 188/270 (70%), Gaps = 10/270 (4%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 |||||||||| || || || || |||||||| ||||| || || || ||||| |||| Sbjct 498610 CATCACGCCAGCCTTCTGGTACTCCCCCACCTTCTTCTCGAAGAAGTTCGTTTTGCCCTG 498669 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGT---GCC 132707 || || || | | ||| || || || || | | | | ||||||||| ||| Sbjct 498670 CAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCGAGCGGTAGTGCTTCTCCTCGCC 498729 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT-GGTTTCGC 132766 || | | | || ||||||| ||| || |||||||||||||| |||| ||| | | ||| Sbjct 498730 GAGC--GAC-ACCAGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGC 498786 Query 132767 AATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCG 132825 || | || | ||| |||||||||||||| ||| || ||| || |||||||| Sbjct 498787 -GTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAACTCG-CGCTCGATGTTC 498844 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGC 132855 ||||| || || ||| ||| |||||| Sbjct 498845 ACCGCATCCACGATGATCTCCAGCACGCGC 498874 >seq27 Length=1024085 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 || ||| | |||||||| | ||||||||| | || || ||||| || |||||| Sbjct 811196 GAGTACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCC 811255 Query 133246 TCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 || ||||| ||| || ||| |||| | ||||| ||| |||| ||||||||| Sbjct 811256 TCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCGTCG 811315 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 ||| ||||||| ||||| ||||||||||||||||| || ||||| ||||||| |||| Sbjct 811316 CTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTC-AGCGT 811374 Query 133366 T-CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 | ||||||| | |||| ||| |||||| | |||||| || ||||| Sbjct 811375 TGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCA 811422 Score = 86.0 bits (94), Expect = 6e-12 Identities = 186/270 (69%), Gaps = 10/270 (4%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || || || || |||||| | ||||| || || || ||||| |||| Sbjct 810553 CATCACGCCGGCCTTCTGGTACTCCCCCACCCTCTTCTCGAAGAAGTTCGTTTTGCCCTG 810612 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGT---GCC 132707 || || || | | ||| || || || || | | | | ||||||||| ||| Sbjct 810613 CAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCGAGCGGTAGTGCTTCTCCTCGCC 810672 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT-GGTTTCGC 132766 || | | | || ||||||| ||| || |||||||||||||| |||| ||| | | ||| Sbjct 810673 GAGC--GAC-ACCAGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGC 810729 Query 132767 AATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCG 132825 || | || | ||| |||||||||||||| ||| || ||| || |||||||| Sbjct 810730 -GTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAACTCG-CGCTCGATGTTC 810787 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGC 132855 ||||| || || ||| ||| |||||| Sbjct 810788 ACCGCATCCACGATGATCTCCAGCACGCGC 810817 >seq36 Length=2713248 Score = 132 bits (146), Expect = 5e-26 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || ||||| || ||||| || ||| | | || || ||| | | Sbjct 1386071 AATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 1386012 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-AC 38360 ||||| | | |||| | || | || |||| ||||| ||||| || ||||||| || Sbjct 1386011 CGACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGAC 1385954 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| |||||||| || | ||||| ||| |||||| Sbjct 1385953 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTAC 1385894 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | |||||||| |||||||||| || | |||||| Sbjct 1385893 AACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 1385843 >seq31 Length=1531288 Score = 131 bits (144), Expect = 2e-25 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||| | | || || ||| | | | Sbjct 938318 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 938259 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | |||| | || | || |||| ||||| ||||| || ||||||| ||| Sbjct 938258 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 938201 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | ||||| ||| ||||||| Sbjct 938200 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACA 938141 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | |||||||| |||||||||| || | |||||| Sbjct 938140 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 938091 Score = 131 bits (144), Expect = 2e-25 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||| | | || || ||| | | | Sbjct 938807 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 938748 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | |||| | || | || |||| ||||| ||||| || ||||||| ||| Sbjct 938747 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 938690 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | ||||| ||| ||||||| Sbjct 938689 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACA 938630 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | |||||||| |||||||||| || | |||||| Sbjct 938629 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 938580 >seq9 Length=588727 Score = 131 bits (144), Expect = 2e-25 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||| | | || || ||| | | | Sbjct 369775 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 369716 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | |||| | || | || |||| ||||| ||||| || ||||||| ||| Sbjct 369715 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 369658 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| || | ||||| ||| ||||||| Sbjct 369657 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACA 369598 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| | |||||||| |||||||||| || | |||||| Sbjct 369597 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 369548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172574922240