Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000227135.2_202011-12-13] 36 sequences; 32,444,968 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq28 168 1e-36 seq22 158 2e-33 >seq28 Length=1171725 Score = 168 bits (186), Expect = 1e-36 Identities = 543/826 (66%), Gaps = 35/826 (4%) Strand=Plus/Minus Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818 ||||| || || ||||| ||||||||| || || || | || || || ||||||| Sbjct 331313 ATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTG 331254 Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||| |||||||||||||| | || || || || ||||| | ||||| | |||| || Sbjct 331253 TTGCATGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATA 331194 Query 221879 TTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCA 221935 ||| | || |||| || || ||||||| | | |||||| || | Sbjct 331193 GCAAACCACACCTC-CTGGGCCTGGA--TCGTCTTGACGCCGCGGCCCTCGGACTCGTAG 331137 Query 221936 TACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG 221995 | || |||||| ||||||| |||||| || ||| || || || ||| || Sbjct 331136 CGCTCG---TAGAGCCGCTCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTG 331080 Query 221996 GCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCC-TCTGCATGAAGAGGTCCGG 222054 |||| |||||| |||| | | | | ||| || | ||| ||| || || || || Sbjct 331079 TTGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGTCT-CATAAACAGATCTGG 331021 Query 222055 GATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTT---TTT 222111 |||||||||||| | ||||| || | || ||||| || || || |||| ||| Sbjct 331020 GATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTT 330961 Query 222112 CCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGC 222171 | ||| || ||| |||| | |||||||||||| ||||| ||||||||||| | || Sbjct 330960 CAGCAG---CAGAAAGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGC 330904 Query 222172 GCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAG 222231 ||| ||||| ||| ||||| ||||| | | |||||||| ||| || Sbjct 330903 GCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAG 330844 Query 222232 GGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTA-CGCACCGCCGGCCC 222290 | || || || ||||| || ||||| || || ||||| | ||||| || | Sbjct 330843 CATTGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCC-GCGC 330785 Query 222291 TCAGGTT----ACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAG 222346 | ||| || ||||| || || || ||||| ||| ||||| ||| || Sbjct 330784 GGATGTTGTGCACGTGCAGA----CCAATGCCGCCGGCCGCTTTGCTGATCACGGCACAC 330729 Query 222347 CTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTT-GACGTTCAGCAGAAAACA 222405 ||| || ||||| |||||| || || ||| ||||| |||| || ||| || || Sbjct 330728 TCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACG-CCACCAGGAAGCA 330670 Query 222406 AGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAA 222465 || ||| || | || | || | ||||||||| || || || ||||||| || || Sbjct 330669 CGAGCTCATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAA 330610 Query 222466 GTAGCCCCTAGACATCAGATCGTACGTCTCTACG---ACTCTGGCGATGTTGTCCCCGTG 222522 | ||||| | ||||| || ||||||||||| ||| | ||| | ||| | | ||||| Sbjct 330609 GAAGCCCTTGGACATAAGGTCGTACGTCTC-ACGCACATTCTTGAGATCT--GCGCCGTG 330553 Query 222523 AATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACA 222568 ||| | ||| | |||| |||| | ||| || | ||||||| Sbjct 330552 AATGCCAAGAGCGACACGCATGAACATCTGCTGTGGGCGCTCCACA 330507 >seq22 Length=704761 Score = 158 bits (174), Expect = 2e-33 Identities = 367/539 (68%), Gaps = 21/539 (4%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCC 25569 |||||| | || ||||| || |||| ||| |||||| | | |||| | ||| | | Sbjct 499884 CTGGACGGTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAATGCTGAA--C 499827 Query 25570 AAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATA 25629 | | |||| ||| || ||||| ||||| | || ||||| || | | || || ||| Sbjct 499826 GACGGGGAGCGGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATA 499767 Query 25630 GTGAACGAGAATCTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTG---GAGGC-CA 25684 || | ||||||||| |||| || | |||| || || ||| || ||| ||||| | Sbjct 499766 GTCATCGAGAATCT-TGCGCAGCGCTTCATGAGCGACGTGAAG---GTGCCAGAGGCGCG 499711 Query 25685 AGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGC 25744 | ||| |||||| |||||| || || || || | ||||| ||| ||| | || Sbjct 499710 CGCGTT-CTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGC 499652 Query 25745 TTCTGATGACGTACATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAG 25803 | ||| |||||||| || ||| || |||| || | || ||||| || || || Sbjct 499651 TGCTGGACACGTACATCACGGACAGCGAGGAGA-AGCTGCGACTGTTGCACGCAATACAG 499593 Query 25804 CACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC 25863 || || ||||| | | ||||||| |||||| || ||||||| ||| ||| Sbjct 499592 ACGATCCCGTGCATCCAAAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGC---AGC 499536 Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGT 25923 || | ||| ||||||||| | | |||||| || ||||||||||| || || ||| Sbjct 499535 GCGAGCTTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGG 499476 Query 25924 TCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTC 25982 ||||| |||| | | |||||||| ||| || || ||||| |||||| || Sbjct 499475 TCGTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGGCTGACGTTCAG 499417 Query 25983 CAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||||||||||| | |||||||| || |||| || || || |||||||| |||| Sbjct 499416 CAACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGACTTCGCATGCCTGCTGTACA 499358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844382019840