Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000227135.2_202011-12-13] 36 sequences; 32,444,968 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq27 168 1e-35 seq22 168 1e-35 seq28 165 1e-34 seq31 98.7 2e-14 >seq27 Length=1024085 Score = 168 bits (186), Expect = 1e-35 Identities = 243/339 (72%), Gaps = 8/339 (2%) Strand=Plus/Plus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||| | |||||| ||| | ||||| ||||| ||||| ||||| | | |||| Sbjct 810536 GACGTGCCCTCCGTGCTCA---TCACGCCGGCCTTCTGGTACTCCCCCACCCTCTTCTCG 810592 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTC 793988 || ||||| || ||||||| |||||||||| |||||| | |||||| | | || Sbjct 810593 AAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCGAG 810652 Query 793989 AGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTAC 794048 ||||||||||||| ||||||||| | ||||| ||||| |||||||| || |||||| Sbjct 810653 CGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATGTAC 810712 Query 794049 TGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAAC 794108 || ||| || | ||||||||||| || ||| ||| ||||||| |||| || ||| Sbjct 810713 TGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAAC 810772 Query 794109 TCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTT 794167 || |||||| | || || || | |||||||| || | | || ||| || | |||| Sbjct 810773 TCGCGCTCGATGTTCACCGCATCCACGATGATCT-CCAGCACGCGCTCGCGCGGCAGCTT 810831 Query 794168 G---TCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 794203 | | || | || |||| |||||||| || ||||| Sbjct 810832 GTGCTTGATGTGCGAGTTGTACAGCAGGCATGCGAAGTC 810870 Score = 129 bits (142), Expect = 9e-24 Identities = 188/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || |||||||||| || || ||||| || |||||| Sbjct 811253 GCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCG 811312 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 |||||| ||||||| ||||| || ||||||||||| ||||| ||||| ||||| | ||| Sbjct 811313 TCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 811372 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | |||||| | ||||| ||| ||||||| |||||| | ||||| | | || | Sbjct 811373 GTTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTC 811432 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| |||| ||||| || || |||| Sbjct 811433 TCCTGCTCCTTGTACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGG 811492 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||||||| | |||||||||| Sbjct 811493 AATGGGTTCTCCTGCTGCAGCGGCTC 811518 >seq22 Length=704761 Score = 168 bits (186), Expect = 1e-35 Identities = 243/339 (72%), Gaps = 8/339 (2%) Strand=Plus/Plus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||| | |||||| ||| | ||||| ||||| ||||| ||||| | | |||| Sbjct 499045 GACGTGCCCTCCGTGCTCA---TCACGCCGGCCTTCTGGTACTCCCCCACCCTCTTCTCG 499101 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTC 793988 || ||||| || ||||||| |||||||||| |||||| | |||||| | | || Sbjct 499102 AAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCGAG 499161 Query 793989 AGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTAC 794048 ||||||||||||| ||||||||| | ||||| ||||| |||||||| || |||||| Sbjct 499162 CGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATGTAC 499221 Query 794049 TGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAAC 794108 || ||| || | ||||||||||| || ||| ||| ||||||| |||| || ||| Sbjct 499222 TGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAAC 499281 Query 794109 TCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTT 794167 || |||||| | || || || | |||||||| || | | || ||| || | |||| Sbjct 499282 TCGCGCTCGATGTTCACCGCATCCACGATGATCT-CCAGCACGCGCTCGCGCGGCAGCTT 499340 Query 794168 G---TCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 794203 | | || | || |||| |||||||| || ||||| Sbjct 499341 GTGCTTGATGTGCGAGTTGTACAGCAGGCATGCGAAGTC 499379 Score = 163 bits (180), Expect = 4e-34 Identities = 242/339 (71%), Gaps = 8/339 (2%) Strand=Plus/Plus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||| | |||||| ||| | ||||| ||||| ||||| ||||| | |||| Sbjct 498593 GACGTGCCCTCCGTGCTCA---TCACGCCAGCCTTCTGGTACTCCCCCACCTTCTTCTCG 498649 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTC 793988 || ||||| || ||||||| |||||||||| |||||| | |||||| | | || Sbjct 498650 AAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCGAG 498709 Query 793989 AGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTAC 794048 ||||||||||||| ||||||||| | ||||| ||||| |||||||| || |||||| Sbjct 498710 CGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATGTAC 498769 Query 794049 TGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAAC 794108 || ||| || | ||||||||||| || ||| ||| ||||||| |||| || ||| Sbjct 498770 TGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATGAAC 498829 Query 794109 TCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTT 794167 || |||||| | || || || | |||||||| || | | || ||| || | |||| Sbjct 498830 TCGCGCTCGATGTTCACCGCATCCACGATGATCT-CCAGCACGCGCTCGCGCGGCAGCTT 498888 Query 794168 G---TCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 794203 | | || | || |||| |||||||| || ||||| Sbjct 498889 GTGCTTGATGTGCGAGTTGTACAGCAGGCATGCGAAGTC 498927 Score = 123 bits (136), Expect = 4e-22 Identities = 187/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || |||||||||| || || ||||| || |||||| Sbjct 499714 GCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCG 499773 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 |||||| ||||||| ||||| || ||||||||||| ||||| ||||| ||||| | ||| Sbjct 499774 TCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 499833 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||| | ||||| ||| ||||||| |||||| | ||||| | | || | Sbjct 499834 ATTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTC 499893 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| |||| ||||| || || |||| Sbjct 499894 TCCTGCTCCTTGTACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGG 499953 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||||||| | |||||||||| Sbjct 499954 AGCGGGTTCTCCTGCTGCAGCGGCTC 499979 Score = 123 bits (136), Expect = 4e-22 Identities = 187/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || |||||||||| || || ||||| || |||||| Sbjct 500170 GCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCG 500229 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 |||||| ||||||| ||||| || ||||||||||| ||||| ||||| ||||| | ||| Sbjct 500230 TCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 500289 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||| | ||||| ||| ||||||| |||||| | ||||| | | || | Sbjct 500290 ATTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTC 500349 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| |||| ||||| || || |||| Sbjct 500350 TCCTGCTCCTTGTACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGG 500409 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||||||| | |||||||||| Sbjct 500410 AGCGGGTTCTCCTGCTGCAGCGGCTC 500435 Score = 105 bits (116), Expect = 1e-16 Identities = 217/323 (67%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||| | |||||||| || || || ||||| || ||||||||| Sbjct 499390 CCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCCGGCATCAGACCGCGCTTC 499449 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || | || ||||| || || || || |||||||| || ||||||||| Sbjct 499450 TTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCCCTCCACCGCGGCAAAG 499509 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||| |||||||| ||| | | || | | ||||||| || |||||| Sbjct 499510 CCGATCAGCCGCTCCTGAAAGCTCGCGCTGCTCCC------GATCCACCGCACAGCCCAC 499563 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| || | | || | ||| | || ||| | || || | |||||| Sbjct 499564 TCCGCCTTCTTTTGGATGCACGGGATCGTCTGTATTGCGTGCAACAGTCGCAGCTTCTCC 499623 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | |||| ||| ||| ||||| | || | ||||| ||||| ||||||||||| || Sbjct 499624 TCGCTGTCCGTGATGTACGTGTCCAGCAGCACAGAGTACGTCTCCGAGTGGATGTTCTCC 499683 Query 794641 ATGGCGATCTGGAAGCCATAAAA 794663 || | |||||| || || || Sbjct 499684 ATCATCAGCTGGAACCCGTAGAA 499706 >seq28 Length=1171725 Score = 165 bits (182), Expect = 1e-34 Identities = 199/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || ||||| || |||| ||| |||||||| ||||| ||||| || ||||| Sbjct 330885 GCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTT 330826 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCG-GCAA 2073655 ||| |||||| || || || | |||| ||||| ||||| | |||||| || ||| Sbjct 330825 CGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAG 330766 Query 2073656 AGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGC 2073715 | || |||||||||||||| ||| ||| | || |||| |||||||| |||||||||| Sbjct 330765 A-CCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGC 330707 Query 2073716 CCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCG 2073775 | ||||| ||| ||||| ||| ||| |||||||| ||||||| || | Sbjct 330706 CGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGG 330647 Query 2073776 TGCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 ||||||| || ||||| || || || || Sbjct 330646 TGCCGGCGTTAAAGAGGGTCGGGGTGGC 330619 Score = 89.7 bits (98), Expect = 8e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 2071851 CACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTT 2071910 ||| || | ||||||||| || ||||||| |||| ||||| ||||| || || | Sbjct 331044 CACACGTCTCATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTG 330985 Query 2071911 CTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGG 2071970 || || || || ||| |||||| || || | | || ||| |||||||| || Sbjct 330984 GTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTCAGCGTGCCAGGG 330925 Query 2071971 CTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||| || ||| ||| ||||||||||||||||| |||||||| Sbjct 330924 CTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCC 330883 Score = 89.7 bits (98), Expect = 8e-12 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 2069564 TCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 2069623 |||| || || ||||| || | | | ||| |||| ||| || || | || |||| Sbjct 331981 TCCATAGACCACGCGCAATAAGGTCCATGACGAGGTACTTGTTCACAACAGGGAACTCGC 331922 Query 2069624 CCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGTTGC 2069683 | ||||| ||||| ||||||||| |||| | |||| | |||| | |||| Sbjct 331921 CGCTCAGCACACGGCGGACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGC 331862 Query 2069684 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCAGGC 2069743 | || |||||||| || | || || |||||| | || || ||||| |||||||||| || Sbjct 331861 CGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAACCAGCAGGGAGTTGCGCATGC 331802 Query 2069744 CGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGGCCGCT 2069792 | ||| |||| | || ||| | ||||||||||||| ||||| Sbjct 331801 CCACCTGCATCACCTTCTCCTTGAGGCTGGCCCAGTCCCAGCGACCGCT 331753 >seq31 Length=1531288 Score = 98.7 bits (108), Expect = 2e-14 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 429059 GGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 429118 |||||| | ||||| ||| | |||||| | |||||||| | |||||||||||||| | Sbjct 1283714 GGAGCGGCTGAAGGGGAAGTACGGCCGGCTGCGCGGCAACTTGATGGGCAAGCGCGTAGA 1283655 Query 429119 CTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGT 429178 |||| |||| ||| | ||||||| |||||| | |||||| | || || || ||||| Sbjct 1283654 CTTTTCGGCCCGCACGGTCATCACCGGCGACCCAAACATCGACGTCGATGAAGTCGGCGT 1283595 Query 429179 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 429222 || | ||| || |||||| ||||| || || || |||| Sbjct 1283594 ACCGTTCTCCGTCGCCATGACGCTGACCTTCCCGGAACGGGTGA 1283551 Score = 93.3 bits (102), Expect = 7e-13 Identities = 206/299 (69%), Gaps = 19/299 (6%) Strand=Plus/Minus Query 652894 CGAGGTGCACCCGCTGCTCATGCTGGGCGCCTGCGCTTCCATCATCCCCTTTTCCAACCA 652953 |||| || ||||| | | || || ||| ||||| ||||| ||||| | ||||||| Sbjct 41025 CGAGATGGACCCGTCGATGATTCTCGGCATTTGCGCCTCCATTATCCCGTACCCCAACCA 40966 Query 652954 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 653013 ||||||| | |||||||||| ||||||| | |||||||| |||||| || || | || Sbjct 40965 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAGGCCATGGGCATC-- 40908 Query 653014 GTCGCT--CAACGCCGATCACGC-CATCGACACCGTGTCGCACGCCCTCTGCTACCCGCA 653070 |||| ||| | | || || ||| |||||| | || | ||||| |||||| || Sbjct 40907 TACGCTTCGAACTTC-AACATGCGCATGGACACCACCGCCCATGTCCTCTTCTACCCACA 40849 Query 653071 GGTGCCGCTGGTGCAGAC---GGCCATGGAGGACGT-CAT-CGGCGCCACGCGCCTCCCG 653125 |||||||||| || ||||| ||||| ||| | || ||| | |||| Sbjct 40848 AAAACCGCTGGTGCGCACCAAAGCCAT----GACGTACATGCACAGCAACGATCTGCCCG 40793 Query 653126 ATGGGCCAGAATGCGCGCGTGGCCATCATGAGCGAC---CCCTACAACCAGGAGGACTC 653181 ||||| || ||| ||||||||| | || || ||||||||| |||||||| Sbjct 40792 -CCGGCCACAACGCGGTGGTGGCCATCTCGTGCTACAGTGGCTACAACCAAGAGGACTC 40735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916242570515804