Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000227135.2_202011-12-13] 36 sequences; 32,444,968 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq6 136 3e-27 seq31 98.7 8e-16 >seq6 Length=529559 Score = 136 bits (150), Expect = 3e-27 Identities = 400/610 (66%), Gaps = 20/610 (3%) Strand=Plus/Minus Query 29860 CTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTT 29919 ||||||||| | ||| || | | |||| | |||||||||| ||||| || ||| | Sbjct 384269 CTCGAGCTGCGACTTGAGGGCACCGACGTGGTTGCGGTAGACGTGGGCGTCACCAAGGGT 384210 Query 29920 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29979 ||| |||| ||| || || || || || | | || || | | ||||| || | Sbjct 384209 GTGCACAAGCTCACCGGGCCGCAGGCCCGTCGCCTTGGCAATGAGGATGGTGAGCAGCGC 384150 Query 29980 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 30039 |||| ||||||||| || || || ||||| |||||||| | ||| | |||||| ||| Sbjct 384149 GTAGGAGGCGATGTTGAAAGGGACGCCGAGACCCATGTCGCACGAGCGCTGGTACAGCAT 384090 Query 30040 ACACGAGAGCTC-------TCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAG 30092 || || ||||| ||||| | ||||||| || ||| | ||||||||| | Sbjct 384089 GCAGGATAGCTCGCTCGTGTCCGT-GTTCACGTAGAATTGAGCAAGCAAGTGGCACGGCG 384031 Query 30093 GAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTT 30152 | || ||||| || | ||||||||||| | | | ||| | ||| | Sbjct 384030 GCAGCGCCATCTTTTGCAGCGCGCACGGGTTCCAGGCAGTGAATAGAAGGCGGCGGTCGT 383971 Query 30153 CTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA-G 30211 ||||| | |||| |||||| | | ||| |||||||| || ||| | Sbjct 383970 TCGGGTTCGCCTTGATCGTCTCCACGATGGACCTGATCTGGTCCACCCCT-TCGCCGTCG 383912 Query 30212 TAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACC 30271 |||| || | || |||| ||||| ||||| || | ||||||||| ||||| || Sbjct 383911 TAGTTCGCTTCAAACCCCTTGTAATCTGCCCCGAAGTGGCGCCACTGGAAGCCGTAGACA 383852 Query 30272 GGTCCCAGGTC----TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCT 30327 || || ||||| ||| | ||| |||| ||||| | |||| | ||| || | Sbjct 383851 GGGCCGAGGTCCATCTCCTTATTCTCTGTC----AAGCCGCGGCTGTCGAGAAACTCGCG 383796 Query 30328 GGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGA 30387 || |||||| |||||||||| | | |||| || | ||| | | ||| || Sbjct 383795 CGAGCCGTTGCCGTCCCAGATGTGAATGTCCTTGTCCGCCAGCAGCTGCGCGTTCGTCTC 383736 Query 30388 CCCTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCG 30446 ||| | | |||||||||||||||||| ||| ||| | ||| ||||| | ||| |||| Sbjct 383735 CCCGCGCAGGAACCACAGCAGCTCCTCGCAC-ACGCCGCGCCAGAAGACACGCTTCGTCG 383677 Query 30447 TGAGGAGGGG 30456 | || || || Sbjct 383676 TCAGCAGCGG 383667 >seq31 Length=1531288 Score = 98.7 bits (108), Expect = 8e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 52826 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 52885 ||||||||||||||||||| || ||||| | ||||| |||||||||||||||||||| Sbjct 40266 CCAGGAGGACATGCCCTTCAACCGCGACGGCATCGTGCCGGACCTCATCATCAACCCCCA 40207 Query 52886 CGCCTTTCCCTCCAGGATGACCGT 52909 |||| |||||||| | ||||| || Sbjct 40206 CGCCATTCCCTCCCGCATGACGGT 40183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310221731312