Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000227135.2_202011-12-13] 36 sequences; 32,444,968 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq36 122 2e-22 seq31 120 7e-22 seq9 120 7e-22 >seq36 Length=2713248 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || ||||| || || |||| ||||| || | | || Sbjct 1385850 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTG 1385909 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 1385910 CGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 1385969 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||| ||||| ||||| | ||||| || | | Sbjct 1385970 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGC 1386029 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | |||||||||||| |||| || || | ||| | |||||| Sbjct 1386030 GCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATT 1386071 >seq31 Length=1531288 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || ||||| || || |||| ||||| || | | || Sbjct 938098 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTG 938157 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 938158 CGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 938217 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||| ||||| ||||| | ||||| || | | Sbjct 938218 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGC 938277 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | |||||||||||| |||| || || | ||| | ||||| Sbjct 938278 GCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 938318 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || ||||| || || |||| ||||| || | | || Sbjct 938587 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTG 938646 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 938647 CGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 938706 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||| ||||| ||||| | ||||| || | | Sbjct 938707 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGC 938766 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | |||||||||||| |||| || || | ||| | ||||| Sbjct 938767 GCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 938807 >seq9 Length=588727 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || ||||| || || |||| ||||| || | | || Sbjct 369555 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTG 369614 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 369615 CGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 369674 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||| ||||| ||||| | ||||| || | | Sbjct 369675 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGC 369734 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | |||||||||||| |||| || || | ||| | ||||| Sbjct 369735 GCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 369775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530649944984