Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000227135.2_202011-12-13] 36 sequences; 32,444,968 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq36 168 1e-36 seq31 167 5e-36 seq9 167 5e-36 seq28 104 5e-17 seq27 96.9 7e-15 seq22 96.9 7e-15 seq15 93.3 9e-14 >seq36 Length=2713248 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | |||| || || |||||||||||||| | Sbjct 1385844 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1385903 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 1385904 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1385963 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| | || || Sbjct 1385964 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 1386023 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || | ||||||||| || |||| ||||| ||||| ||||||||| Sbjct 1386024 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATT 1386071 >seq31 Length=1531288 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | |||| || || |||||||||||||| | Sbjct 938092 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 938151 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 938152 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 938211 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| | || || Sbjct 938212 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 938271 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 938272 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 938318 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | |||| || || |||||||||||||| | Sbjct 938581 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 938640 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 938641 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 938700 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| | || || Sbjct 938701 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 938760 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 938761 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 938807 >seq9 Length=588727 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | |||| || || |||||||||||||| | Sbjct 369549 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 369608 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 369609 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 369668 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| | || || Sbjct 369669 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 369728 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 369729 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 369775 >seq28 Length=1171725 Score = 104 bits (114), Expect = 5e-17 Identities = 231/341 (68%), Gaps = 12/341 (4%) Strand=Plus/Minus Query 273780 GTGAAAATGTACCTGGCACTCG-CATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTG 273838 ||||| ||||| | ||| | || | |||||||||||||| ||||| | || ||| ||||| Sbjct 904957 GTGAAGATGTAGC-GGCCCGCGGCGTGGTCCTTGCCACCGTGCAGACGCGTACCGAACTG 904899 Query 273839 ---ACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895 | ||| | |||| ||| | | ||||||||| || || | ||||| ||||| Sbjct 904898 GCCATCCTTGCGCAGCAGCGGG---ACGTTGTTGCTGCCCACAAAGTCCTGCGCCATTCC 904842 Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955 ||||| ||| | ||| || |||||| ||||| || ||| ||| || | || || Sbjct 904841 GACGATCGTCTGCACAAGCGACTGCTCGCCATGGTGGTATGCGGAGTGCTCCGAGACGTA 904782 Query 273956 ACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAA 274015 || | ||| | ||||| | | || |||||| |||||||| ||| ||| Sbjct 904781 GCCGGCAAGCTGCACCACCTTGATGGAGTTCACCAAGTTGCGCTTGAAGCAGGAGAACAG 904722 Query 274016 CACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGCGTTCCAAATC 274075 | ||| ||||| ||||||||| || |||| || || || ||||| || | || Sbjct 904721 GATCTTGCGCTGGCCGGGCTTGAAGCCGTCAATCACGCTCGGGATGCTGCGCTCGCAGTC 904662 Query 274076 ATACCGA--GAGAACAAAATCAGTTCCTTGTCAATGAAGTC 274114 ||| ||||| | |||||| |||||||| | ||||| Sbjct 904661 --GGCGATGGAGAAGAGAATCAGCTCCTTGTCCACAAAGTC 904623 >seq27 Length=1024085 Score = 96.9 bits (106), Expect = 7e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || || |||||||| || || || |||| | Sbjct 810774 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCG 810715 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | ||| |||| || | ||||| || Sbjct 810714 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTAC 810655 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | || |||| || |||||| | || || || ||||| ||||| |||||| Sbjct 810654 CGCTCGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTC 810595 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 ||||| ||| | || | || || || |||||| Sbjct 810594 TTCGAGAAGAGGGTGGGGGAGTACCAGAAGGCC 810562 >seq22 Length=704761 Score = 96.9 bits (106), Expect = 7e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || || |||||||| || || || |||| | Sbjct 499283 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCG 499224 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | ||| |||| || | ||||| || Sbjct 499223 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTAC 499164 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | || |||| || |||||| | || || || ||||| ||||| |||||| Sbjct 499163 CGCTCGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTC 499104 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 ||||| ||| | || | || || || |||||| Sbjct 499103 TTCGAGAAGAGGGTGGGGGAGTACCAGAAGGCC 499071 Score = 93.3 bits (102), Expect = 9e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || || |||||||| || || || |||| | Sbjct 498831 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCG 498772 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | ||| |||| || | ||||| || Sbjct 498771 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTAC 498712 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | || |||| || |||||| | || || || ||||| ||||| |||||| Sbjct 498711 CGCTCGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTC 498652 Query 230373 TTCGAAAAG 230381 ||||| ||| Sbjct 498651 TTCGAGAAG 498643 >seq15 Length=618357 Score = 93.3 bits (102), Expect = 9e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 273774 AGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCA 273833 || |||||||||||||| | | || ||||| || || ||| | | || || Sbjct 523670 AGCTTCGTGAAAATGTAGCGCGGGGCGGCGTGGTCGTTACCGAGCTGCTGTCGAGAGCCG 523729 Query 273834 AACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATA 273893 ||||||||||| |||| ||| ||| |||||||||| ||| | | | ||| ||||| Sbjct 523730 AACTGACCCTCTGGCACGAGCAGGTTGATGTTGTTGCCGCCGGTGAAGTTCTGCGCCATC 523789 Query 273894 TTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGA 273932 |||||||| ||| |||| || || |||||||||||||| Sbjct 523790 TTCACGATGGTCTCCTGCAGCGAGGCCTCGCCGTGGTGA 523828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738717191544