Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000227135.2_202011-12-13] 36 sequences; 32,444,968 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq31 206 2e-48 seq9 206 2e-48 seq36 199 4e-46 >seq31 Length=1531288 Score = 206 bits (228), Expect = 2e-48 Identities = 188/236 (80%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| ||||||||| || || | |||||| ||||||||| ||||||||| ||||| | Sbjct 938085 CATCAC-GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGT 938143 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||| ||||| ||||| | || || ||||||||||||||||| ||||||||||| |||| Sbjct 938144 AGTCCGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGT 938203 Query 41748 CCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCG 41807 ||| || | || |||||||||| ||| || ||||| | | |||||||||| Sbjct 938204 CCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCG 938263 Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||||||| || ||||| || || ||||||||||| ||||| ||||||||| Sbjct 938264 GCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 938319 Score = 206 bits (228), Expect = 2e-48 Identities = 188/236 (80%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| ||||||||| || || | |||||| ||||||||| ||||||||| ||||| | Sbjct 938574 CATCAC-GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGT 938632 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||| ||||| ||||| | || || ||||||||||||||||| ||||||||||| |||| Sbjct 938633 AGTCCGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGT 938692 Query 41748 CCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCG 41807 ||| || | || |||||||||| ||| || ||||| | | |||||||||| Sbjct 938693 CCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCG 938752 Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||||||| || ||||| || || ||||||||||| ||||| ||||||||| Sbjct 938753 GCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 938808 >seq9 Length=588727 Score = 206 bits (228), Expect = 2e-48 Identities = 188/236 (80%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| ||||||||| || || | |||||| ||||||||| ||||||||| ||||| | Sbjct 369542 CATCAC-GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGT 369600 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||| ||||| ||||| | || || ||||||||||||||||| ||||||||||| |||| Sbjct 369601 AGTCCGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGT 369660 Query 41748 CCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCG 41807 ||| || | || |||||||||| ||| || ||||| | | |||||||||| Sbjct 369661 CCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCG 369720 Query 41808 ACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||||||| || ||||| || || ||||||||||| ||||| ||||||||| Sbjct 369721 GCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 369776 >seq36 Length=2713248 Score = 199 bits (220), Expect = 4e-46 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| ||||||||| ||||||||| ||||| ||||| || Sbjct 1385843 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 1385902 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||||||||||||||| ||||||||||| ||||||| || Sbjct 1385903 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 1385962 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||||| | | |||||||||| |||||| Sbjct 1385963 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCAC 1386022 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || ||||| || || ||||||||||| ||||| |||||||| Sbjct 1386023 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1386070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303791963200