Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq22 439 3e-118 seq27 219 4e-52 seq36 156 4e-33 seq9 156 4e-33 seq31 152 5e-32 seq8 87.8 2e-12 >seq22 Length=704707 Score = 439 bits (486), Expect = 3e-118 Identities = 626/863 (73%), Gaps = 18/863 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || |||||||| | ||| | ||| | ||||| || || |||| ||| Sbjct 499925 GAGCCGCTGCAGCAGGAGAACCCGCTCCGCTACGTCCTCTTCCCAATCCAGTACCATGAC 499866 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || |||||| | |||||| Sbjct 499865 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCTG 499806 Query 116696 TCCAAGGACACGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| |||| || ||||||| | ||| ||||||| ||||| || ||||||||||| Sbjct 499805 GGCAACGACATGAAGGACTGGGCAAYGCT-GAACGACGGGGAGCGGCACTTCATCAAGCA 499747 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||| ||||| ||||||| |||||||||||| |||| ||||||||| | |||| || Sbjct 499746 CGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTTGCGCAGCGCTT 499687 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | | || || ||| ||||| | |||||||| |||||||| || ||| | |||| Sbjct 499686 C-ATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGG 499628 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAG 116932 ||||| | |||||||| | ||| || || | ||||||||| | || | | ||| Sbjct 499627 AGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACATCACGGACAGC-GAG 499569 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 |||||||| || ||||| |||| || ||||||| |||||| || || ||||||| ||| Sbjct 499568 GAGAAGCTGCGACTGTTGCACGCAATACAGACGATCCCGTGCATCCAAAAGAAGGCGGAG 499509 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||| |||| ||||||| |||| | | || ||| | ||||| ||| | | ||| Sbjct 499508 TGGGCTGTGCGGTGGATCGGGAGCAGCGCG--AGCTTTCAG-GAGCGGCTGATCGGCTTT 499452 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || || |||||| | |||||||| || ||| ||| | || ||||| ||||| Sbjct 499451 GCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAG 499392 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 ||||| || ||||| || ||||| |||||||||||||||||||| | |||||||| || Sbjct 499391 CGCGGTCTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTA 499332 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-GC 117228 || ||||| || || |||||| ||| ||| | ||| | | | |||| | Sbjct 499331 CACACGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCA-CAAGCTGCCGCGCGA 499273 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAG 117287 |||||| ||||||| || || ||||| |||||||| ||| ||| || ||| | Sbjct 499272 GCGCGTGCTGGAGATCATCGTGGATGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACG 499214 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 ||||||||||||| ||| | || | || ||| | | |||| |||| |||||||||||| Sbjct 499213 CGCTGCCGGTGCGGCTGATTGGCATGAA-CGCGGAGCTGATGGCGCAGTACATCGAGTTC 499155 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||| ||| |||||||| | ||| | || | ||||||||| | || | | ||| Sbjct 499154 GTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCGCTCGACGCAGCCG 499095 Query 117407 CTGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | | ||||| Sbjct 499094 TTCGACTTCATGGAGATGATCTC 499072 Score = 194 bits (214), Expect = 2e-44 Identities = 229/305 (75%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || |||||||| | ||| | ||| | ||||| || || |||| ||| Sbjct 500381 GAGCCGCTGCAGCAGGAGAACCCGCTCCGCTACGTCCTCTTCCCAATCCAGTACCATGAC 500322 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || |||||| | |||||| Sbjct 500321 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCTG 500262 Query 116696 TCCAAGGACACGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| |||| || ||||||| | ||| ||||||| ||||| || ||||||||||| Sbjct 500261 GGCAACGACATGAAGGACTGGGCAATGCT-GAACGACGGGGAGCGGCACTTCATCAAGCA 500203 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||| ||||| ||||||| |||||||||||| |||| ||||||||| | |||| || Sbjct 500202 CGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTTGCGCAGCGCTT 500143 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | | || || ||| ||||| | |||||||| |||||||| || ||| | |||| Sbjct 500142 C-ATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGG 500084 Query 116874 AGAAC 116878 ||||| Sbjct 500083 AGAAC 500079 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGC-TTCCTCACCGAAG 117287 |||||| ||||||| || || ||||| |||||||| ||| ||| || ||| | Sbjct 498820 GCGCGTGCTGGAGATCATCGTGGATGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACG 498762 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 ||||||||||||| ||| | || | || ||| | | |||| |||| |||||||||||| Sbjct 498761 CGCTGCCGGTGCGGCTGATTGGCATGAAC-GCGGAGCTGATGGCGCAGTACATCGAGTTC 498703 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||| ||| |||||||| | ||| | || | ||||||||| | || | | ||| Sbjct 498702 GTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCGCTCGACGCAGCCG 498643 Query 117407 CTGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | | ||||| Sbjct 498642 TTCGACTTCATGGAGATGATCTC 498620 >seq27 Length=1024085 Score = 219 bits (242), Expect = 4e-52 Identities = 285/386 (74%), Gaps = 6/386 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || |||||||| ||| | ||| | ||||| || || |||| ||| Sbjct 811518 GAGCCGCTGCAGCAGGAGAACCCATTCCGCTACGTCCTCTTCCCAATCCAGTACCATGAC 811459 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || |||||| | |||||| Sbjct 811458 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCTG 811399 Query 116696 TCCAAGGACACGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| |||| || ||||||| | |||| ||||||| ||||| || ||||||||||| Sbjct 811398 GGCAACGACATGAAGGACTGGGCAACGCT-GAACGACGGGGAGCGGCACTTCATCAAGCA 811340 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||| ||||| ||||||| |||||||||||| |||| ||||||||| | |||| || Sbjct 811339 CGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTTGCGCAGCGCTT 811280 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | | || || ||| ||||| | |||||||| |||||||| || ||| | |||| Sbjct 811279 C-ATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGG 811221 Query 116874 AGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAG 116932 ||||| | |||||||| | ||| || || | ||||||||| | || | | ||| Sbjct 811220 AGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACATCACGGACAGC-GAG 811162 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCAT 116958 |||||||| || ||||| |||| || Sbjct 811161 GAGAAGCTGCGACTGTTGCACGCAAT 811136 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGC-TTCCTCACCGAAG 117287 |||||| ||||||| || || ||||| |||||||| ||| ||| || ||| | Sbjct 810817 GCGCGTGCTGGAGATCATCGTGGATGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACG 810759 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 ||||||||||||| ||| | || | || ||| | | |||| |||| |||||||||||| Sbjct 810758 CGCTGCCGGTGCGGCTGATTGGCATGAAC-GCGGAGCTGATGGCGCAGTACATCGAGTTC 810700 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||| ||| |||||||| | ||| | || | ||||||||| | || | | ||| Sbjct 810699 GTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCGCTCGACGCAGCCG 810640 Query 117407 CTGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | | ||||| Sbjct 810639 TTCGACTTCATGGAGATGATCTC 810617 >seq36 Length=2713245 Score = 156 bits (172), Expect = 4e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || ||||| || ||||| || ||| | | || || || | | Sbjct 1386071 AATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 1386012 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | |||| | |||| || || | ||||| ||||||||||| |||||| Sbjct 1386011 CGACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACC 1385953 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| ||| ||||| |||||||| || | ||||| ||| ||||||| Sbjct 1385952 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACRCTCTCGGACTACA 1385893 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||||||||| || ||| ||||| || | |||||| Sbjct 1385892 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 1385843 >seq9 Length=588727 Score = 156 bits (172), Expect = 4e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | | || || || | | | Sbjct 369775 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 369716 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 369715 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 369657 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 369656 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAA 369597 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||| |||||||||| || ||| ||||| || | ||||||| Sbjct 369596 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGCG 369547 >seq31 Length=1531288 Score = 152 bits (168), Expect = 5e-32 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | | || || || | | | Sbjct 938318 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 938259 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 938258 GACACGATCGAGAACG-TGAAGGCSAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 938200 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 938199 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAA 938140 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||| ||| |||||||||| || ||| ||||| || | ||||||| Sbjct 938139 CATCCAGAARGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGCG 938090 Score = 152 bits (168), Expect = 5e-32 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| | | || || || | | | Sbjct 938807 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 938748 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 938747 GACACGATCGAGAACG-TGAAGGCSAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 938689 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 938688 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAA 938629 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||| ||| |||||||||| || ||| ||||| || | ||||||| Sbjct 938628 CATCCAGAARGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGCG 938579 >seq8 Length=505700 Score = 87.8 bits (96), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 73581 CTCAACCACGCCGTGCTGCTGGTCGGCTACGGCGTCGAGAACGGAGTG---CCCTACTGG 73637 || ||||||| ||||||||| ||||| ||| | ||| ||| | | || |||||| Sbjct 413661 CTGAACCACGGCGTGCTGCTCGTCGGGTACAACA---AGACCGGTGAGGTTCCGTACTGG 413605 Query 73638 GTGTTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGT 73690 ||| |||||||| ||||||| || |||||||||||||| ||||| | ||||| Sbjct 413604 GTGATCAAGAACTCGTGGGGTGAGGACTGGGGCGAGAAGGGCTACGTGCGCGT 413552 Score = 87.8 bits (96), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 73581 CTCAACCACGCCGTGCTGCTGGTCGGCTACGGCGTCGAGAACGGAGTG---CCCTACTGG 73637 || ||||||| ||||||||| ||||| ||| | ||| ||| | | || |||||| Sbjct 416489 CTGAACCACGGCGTGCTGCTCGTCGGGTACAACA---AGACCGGTGGGGTTCCGTACTGG 416433 Query 73638 GTGTTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGCGT 73690 ||| |||||||| ||||||| || |||||||||||||| ||||| | ||||| Sbjct 416432 GTGATCAAGAACTCGTGGGGTGAGGACTGGGGCGAGAAGGGCTACGTGCGCGT 416380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218968151360