Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq31 145 5e-30 seq9 143 2e-29 seq36 140 2e-28 >seq31 Length=1531288 Score = 145 bits (160), Expect = 5e-30 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||||||| | || || ||||| ||||||||||| || Sbjct 938092 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCYTTCTGGATGTTGTAGTCCGAG 938151 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 ||| ||| | || |||| ||||||||| ||||| || || |||||||||| || |||| Sbjct 938152 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 938211 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | |||| ||| ||| || || Sbjct 938212 -ATGCCCTCCTTGTCCTGGATCTTSGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCAC 938270 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||| || |||||||| || || ||||| ||||||||||| Sbjct 938271 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 938318 Score = 145 bits (160), Expect = 5e-30 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||||||| | || || ||||| ||||||||||| || Sbjct 938581 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCYTTCTGGATGTTGTAGTCCGAG 938640 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 ||| ||| | || |||| ||||||||| ||||| || || |||||||||| || |||| Sbjct 938641 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 938700 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | |||| ||| ||| || || Sbjct 938701 -ATGCCCTCCTTGTCCTGGATCTTSGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCAC 938759 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||| || |||||||| || || ||||| ||||||||||| Sbjct 938760 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 938807 >seq9 Length=588727 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||||||| | || || ||||| ||||||||||| || Sbjct 369549 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 369608 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 ||| ||| | || |||| ||||||||| ||||| || || |||||||||| || |||| Sbjct 369609 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 369668 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | |||| ||| ||| || || Sbjct 369669 -ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCAC 369727 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||| || |||||||| || || ||||| ||||||||||| Sbjct 369728 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 369775 >seq36 Length=2713245 Score = 140 bits (154), Expect = 2e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||||||| | || || ||||| ||||||||||| || Sbjct 1385844 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1385903 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 || ||| | || |||| ||||||||| ||||| || || |||||||||| || |||| Sbjct 1385904 AGYGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1385963 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | |||| ||| ||| || || Sbjct 1385964 -ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCAC 1386022 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||| || |||||||| || || ||||| ||||||||||| Sbjct 1386023 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1386070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071858252160