Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq22 159 5e-34 seq28 132 7e-26 >seq22 Length=704707 Score = 159 bits (176), Expect = 5e-34 Identities = 391/584 (67%), Gaps = 16/584 (3%) Strand=Plus/Minus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||| || || ||| ||| |||||||| ||| | |||||| || || || | | Sbjct 499890 CCTCTTCCCAATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCAT 499831 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 |||||||| || ||| |||| ||| ||| ||| || | || |||| | | ||| Sbjct 499830 CTGGACGGTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAAYGC---TGAA 499774 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || ||||| | || || |||| | | |||||||| |||||| ||| || || Sbjct 499773 CGACGGGGAGCGGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCCGGCAGCGACGGCAT 499714 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 |||| ||| ||||| | || ||| || ||| | ||||||| | || | Sbjct 499713 AGTCATCGAGAATCTTGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCAGAGGCG-CGCG 499655 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||| ||||| | ||||| |||||| | |||||||| | ||||||| ||| Sbjct 499654 CGTTCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGC 499595 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACG 125351 | |||| |||||| | || | || | | || | || || ||||||| | ||| Sbjct 499594 TGGACACGTACAT-CACGGACAGCGAGGAGAAGCTGCGACTGTTGCACGCAATACAGACG 499536 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG--ATGACGACAAGT 125409 | |||| || | || ||||| | |||| | |||||||||| | | | || Sbjct 499535 ATCCCGTGCATCCAAAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGCAGCGCGAGC 499476 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGT 125468 ||| || | ||| | | || ||||| || |||||||| |||||||| |||| Sbjct 499475 TTTCAGGAGCGG-----CTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGT 499421 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 ||| |||| | | || ||||| ||||||||||| || ||||| || |||||| ||| Sbjct 499420 CGTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGGCTGACGTTCAGC 499362 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| | || || || ||||||||||||||| ||||| || Sbjct 499361 AACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGACTTCGC 499318 >seq28 Length=1171705 Score = 132 bits (146), Expect = 7e-26 Identities = 319/476 (67%), Gaps = 10/476 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||| ||| || ||||| | |||||||| | || || |||||||| ||| Sbjct 330874 CAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTATCTCGAGCCCTGGCACGCTGAC 330933 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAA---AACTCTGGCTTTGAAGAGGCACGAGCCAGG 96992 || |||| |||| | | ||| ||| ||| | || || || || ||| | Sbjct 330934 GTCTTTGGCTTTCT---GCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCCCGC 330990 Query 96993 GACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGC 97052 ||| | || || || || ||| | |||||| |||| |||| || || || || || Sbjct 330991 GACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTATGAGACGTGTGAAAAGCGAGGGG 331050 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | |||| || ||| ||| || ||| || ||||| |||||||| || |||||| Sbjct 331051 AAGTGGACGCTGATGGATCCCAACACGTGCCCGGGTCTCAGCGATTGCTATGGTGAAGAG 331110 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGT-GAGACGAGTCGATGC 97171 |||||| ||| | ||||||| |||||||| ||| |||||| || | || Sbjct 331111 TTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTCAAGACGA-TCCAGGC 331169 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | || ||||| || ||| || | ||||| | ||||| ||| |||| | | || Sbjct 331170 CCAGGAGGTGTGGTTTGCTATCCTGGAGTCTCAGATCGAGACGGGAGGGCCGTTCGTCCT 331229 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCA-ACGCCACTTGGGCACCATCAAGGGCT 97290 ||||||||| | || |||| ||||| | | ||| ||||| |||||| ||| Sbjct 331230 CTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTT-GGCACGATCAAGTGCT 331288 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 | || || |||||||| ||||| |||||| | || || | |||||||| || ||| Sbjct 331289 CGAACCTATGCACGGAGATTGTCGAGTACACGTCGCCACAGGAGACGGCGGTGTGC 331344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058866523360