Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq34 86.0 6e-12 seq9 84.2 2e-11 seq31 82.4 7e-11 seq11 82.4 7e-11 >seq34 Length=1750856 Score = 86.0 bits (94), Expect = 6e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 115607 GGTTGCTCCAGGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCG 115666 |||||| | |||||||||||||||||| ||||||| ||||| || ||||||||||||| Sbjct 482636 GGTTGCGACCGGTGAGGATCGAACTCACGACCTTGGGATTATGAGACCCACGCGCTGCCG 482577 Query 115667 ATTGCGCTAC 115676 | |||||||| Sbjct 482576 ACTGCGCTAC 482567 >seq9 Length=588727 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 ||| || || | || |||| ||||| ||||| || || ||||| || | ||| || || Sbjct 369545 CACGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 369604 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| | ||||||||||| || ||| | ||||| | | ||||| || || Sbjct 369605 CGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 369664 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-T 94955 || || || || ||||| | || || ||||| ||| ||| ||||| || || | Sbjct 369665 CGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTC-GCTCGGCT 369723 Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || | || ||| || || || || || || ||||| |||||||||||| Sbjct 369724 CCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 369776 >seq31 Length=1531288 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/233 (68%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 ||| || || | || |||| ||||| ||||| || || || || || | ||| || || Sbjct 938088 CACGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCYTTCTGGATGTTGTAGTC 938147 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| | ||||||||||| || ||| | ||||| | | ||||| || || Sbjct 938148 CGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 938207 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-T 94955 || || || || ||||| | || || ||||| ||| ||| ||||| || || | Sbjct 938208 CGGGATGCCCTCCTTGTCCTGGATCTTSGCCTTCACGTTCTCGATCGTGTC-GCTCGGCT 938266 Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || | || ||| || || || || || || ||||| |||||||||||| Sbjct 938267 CCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 938319 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/233 (68%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 ||| || || | || |||| ||||| ||||| || || || || || | ||| || || Sbjct 938577 CACGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCYTTCTGGATGTTGTAGTC 938636 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| | ||||||||||| || ||| | ||||| | | ||||| || || Sbjct 938637 CGAGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 938696 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-T 94955 || || || || ||||| | || || ||||| ||| ||| ||||| || || | Sbjct 938697 CGGGATGCCCTCCTTGTCCTGGATCTTSGCCTTCACGTTCTCGATCGTGTC-GCTCGGCT 938755 Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || | || ||| || || || || || || ||||| |||||||||||| Sbjct 938756 CCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 938808 >seq11 Length=580222 Score = 82.4 bits (90), Expect = 7e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 115609 TTGCTCCAGGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCGAT 115668 |||| | |||||||||||||||||| ||||||| ||||| || |||||||||||||| Sbjct 371699 TTGCGACCGGTGAGGATCGAACTCACGACCTTGGGATTATGAGACCCACGCGCTGCCGAC 371758 Query 115669 TGCGCTAC 115676 |||||||| Sbjct 371759 TGCGCTAC 371766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290998268960