Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq20 100 3e-16 seq28 91.5 2e-13 seq31 84.2 3e-11 >seq20 Length=752619 Score = 100 bits (110), Expect = 3e-16 Identities = 168/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 15352 GGAAGTCATGTATTCGGGCTTTACCGGCGAAAGGATCCAAAGCACCATATTTATGGGACC 15411 ||| ||| | |||||||| | || ||||| || || || | | || | || || Sbjct 2332 GGATGTCTTTTATTCGGGGATCACGGGCGAGTTAATGCAGGGCTACGTCTTCTTTGGGCC 2273 Query 15412 GACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCGCACGG 15471 | ||||| || || ||||| |||||||| | |||||||||||||| || ||| ||| Sbjct 2272 CATCTACTACCAGCGCCTCAAGCACATGGTCACAGACAAGATGCACGCTCGCTCGACCGG 2213 Query 15472 ACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGCGGTGGCCTCCG 15531 | | ||| |||| ||||||||| | | || || || | | ||||||||||| Sbjct 2212 GCCTCGGTCGATGCTCACTCGCCAGCCAACCGAGGGCCGGTCTCGCAGTGGTGGCCTCCG 2153 Query 15532 CTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAATTCCTCAACGA 15591 | ||||||| ||||| |||||||| | | ||||||| || | | |||||||| Sbjct 2152 CGTTGGAGAAATGGAGCGCGACTGCATGGTTGGCTACGGCGCGTCCAACCTTCTCAACGA 2093 Query 15592 GCG 15594 ||| Sbjct 2092 GCG 2090 >seq28 Length=1171705 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 126180 GGTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTG 126239 |||| | ||||||||| || || |||||||| || | || ||||| || ||||| Sbjct 904952 GGTGAAGATGTAGCGGCCCGCGGCGTGGTCCTTGCCACCGTGCAGACGCGTACCGAACTG 904893 Query 126240 ACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGAC 126299 || ||| || || | | || |||||| ||||||||||||||||| | ||| Sbjct 904892 GCCATCCTTGCGCAGCAGCGGGACGTTGTTGCTGCCCACAAAGTCCTGCGCCATTCCGAC 904833 Query 126300 AATGGTCTCGCAC-AGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGC 126358 || |||| |||| || ||||||||| || | ||| ||| ||||| | ||||||| Sbjct 904832 GATCGTCT-GCACAAGCGACTGCTCGCCATGGTGGTATGCGGAGTGCTCCGAGACGTAGC 904774 Query 126359 CGCTCAGCTGCGCAACCTTGAT 126380 || |||||| | |||||||| Sbjct 904773 CGGCAAGCTGCACCACCTTGAT 904752 >seq31 Length=1531288 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 15056 ATTGGCGACAAGTTTTGCT-CTGGTATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCC 15114 || ||||||||||| ||| | | |||| ||||| ||||| |||||| || | Sbjct 40325 ATCGGCGACAAGTTCTGCAGCCGCCATGGA-CAAAAAGGCACCAACGGCATCCAGTTTCG 40267 Query 15115 CCAGGAAGACATGCCCTTTA-CCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCA 15173 |||||| ||||||||||| | ||||| | ||||| ||| ||| | |||||||||||| Sbjct 40266 CCAGGAGGACATGCCCTTCAACCGCGAC-GGCATCGTGCCGGACCTCATCATCAACCCCC 40208 Query 15174 ACTGCATCCCGTCCCGCATGAC 15195 || ||| || ||||||||||| Sbjct 40207 ACGCCATTCCCTCCCGCATGAC 40186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611391724873600