Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq22 131 3e-25 seq28 91.5 3e-13 seq27 87.8 4e-12 >seq22 Length=704707 Score = 131 bits (144), Expect = 3e-25 Identities = 554/856 (65%), Gaps = 28/856 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||||||| ||| ||||| | ||||||||||||||| || | || Sbjct 499045 TCGAAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 499104 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||| ||||| | ||| || | || | | ||||| || || ||||| | Sbjct 499105 GAGCGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATG 499164 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | |||||||||||||| || || | || || |||||| Sbjct 499165 TACTGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATG 499224 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | | || || ||| | | | | |||| Sbjct 499225 AACTCGCGCTCGATGTTCACCGCATCCACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 499284 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| | || || || | || ||| || ||||||| Sbjct 499285 TTGTGCTTGATGTGCGAGTTGTACAGCAGGCATGCGAAGTCCGT--GTGTAGGCCCTCGT 499342 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 |||| ||||| ||||||| | || | ||| || ||||||| || || ||| | || Sbjct 499343 CGCGCGAGATGAGCTCGTTG--CTGAACGTCAGCCCCGGCATCAGACCGCGCTTCTTCAG 499400 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATG-CAA 251974 |||||| | ||||| || || || || || | | ||||| || | | | | | | | Sbjct 499401 CCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCCCTCCAC-CGCGGCAAAGCCGA 499459 Query 251975 CAAGGCGCTCAGCAAACGACTTGTCCTGCGAC--AAGAACTTCTGTGCCCATGCTGCCTT 252032 || ||||| ||| || | |||| | | || | ||||| | ||||| Sbjct 499460 TCAGCCGCTCCTGAAA--GCTCGCGCTGCTCCCGATCCACCGCACAGCCCACTCCGCCTT 499517 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCAT-CAA-AGAGAGAG-TTCCGCTCGGCATC 252089 |||| | ||||| || | ||||| | ||| || || ||| |||| Sbjct 499518 CTTTTGGATGCACGGGATCGTCTGTATTGCGTGCAACAGTCGCAGCTTCTCCTCG---CT 499574 Query 252090 GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAA 252149 |||| |||| || || ||||| | ||||||| ||||||| |||||| || | | Sbjct 499575 GTCCGTGATGTACGTGTCCAGCAGCACAGAGTACGTCTCCGAGTGGATGTTCTCCATCAT 499634 Query 252150 CATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTT 252209 || |||| | | ||||| ||||| || | | || || | ||| | Sbjct 499635 CAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTG 499694 Query 252210 TGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGAT 252269 |||| ||||| || || ||||| |||||||| || |||||| |||| | | |||||| Sbjct 499695 CGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGAT 499754 Query 252270 GAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG 252329 |||||| ||||| ||||||| ||| | | |||||| ||||| | ||| Sbjct 499755 GAAGTGCCGCTCCCCGTCGTTCAGCRTTGC---CCAGTCCTTCATGTCGTTGCCCAGGTC 499811 Query 252330 AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCG-AACACATCAG 252388 | || ||||||||||||| | | || || ||||||| ||||| | | ||| Sbjct 499812 GATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC-TTGCGCCAGATGTCAT 499870 Query 252389 GGTACTTGATTGGGAA 252404 |||||| ||||||||| Sbjct 499871 GGTACTGGATTGGGAA 499886 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||||||| ||| ||||| | ||||||||||||||| || | || Sbjct 498593 TCGAAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 498652 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||| ||||| | ||| || | || | | ||||| || || ||||| | Sbjct 498653 GAGCGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATG 498712 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | |||||||||||||| || || | || || |||||| Sbjct 498713 TACTGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATG 498772 Query 251743 AATTC 251747 || || Sbjct 498773 AACTC 498777 Score = 86.0 bits (94), Expect = 1e-11 Identities = 138/195 (71%), Gaps = 5/195 (3%) Strand=Plus/Plus Query 252211 GCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATG 252270 |||| ||||| || || ||||| |||||||| || |||||| |||| | | ||||||| Sbjct 500152 GCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATG 500211 Query 252271 AAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGA 252330 ||||| ||||| ||||||| ||| | | |||||| ||||| | ||| Sbjct 500212 AAGTGCCGCTCCCCGTCGTTCAGCATTGC---CCAGTCCTTCATGTCGTTGCCCAGGTCG 500268 Query 252331 ACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCG-AACACATCAGG 252389 | || ||||||||||||| | | || || ||||||| ||||| | | ||| | Sbjct 500269 ATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC-TTGCGCCAGATGTCATG 500327 Query 252390 GTACTTGATTGGGAA 252404 ||||| ||||||||| Sbjct 500328 GTACTGGATTGGGAA 500342 >seq28 Length=1171705 Score = 91.5 bits (100), Expect = 3e-13 Identities = 213/318 (67%), Gaps = 20/318 (6%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTC----TCGCGGTATGATGTGGAGCGTTCTAT 218573 ||||| | ||||||||||| ||||| ||| |||| | || ||||| || Sbjct 904617 GACTTTGTGGACAAGGAGCTGATTCTCTTCTCCATCGCCGACTG----CGAGCGCAGCAT 904672 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 || |||||| | || ||| ||||||| ||||| |||||||| || || ||||| Sbjct 904673 CCCGAGCGTGATTGACGGCTTCAAGCCCGGCCAGCGCAAGATCCTGTTCTCCTGCTTCAA 904732 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| ||| |||| | || ||||| | ||| || | || || || || || || Sbjct 904733 GCGCAACTTGGTGAACTCCATCAAGGTGGTGCAGCTTGCCGGCTACGTCTCGGAGCACTC 904792 Query 218694 TGGCTACCATCACGGTGAGCA---GAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750 | ||||| || || ||||| | | ||||| | || || || ||||| ||||| Sbjct 904793 CGCATACCACCATGGCGAGCAGTCGCTTGTGCAG---ACGATCGTCGGAATGGCGCAGGA 904849 Query 218751 CTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCA---ACGGTCAGTTTGGTTCTCG 218807 || ||||||||| |||||| | | |||||| | || | || ||||| ||| | || Sbjct 904850 CTTTGTGGGCAGCAACAACGT---CCCGCTGCTGCGCAAGGATGGCCAGTTCGGTACGCG 904906 Query 218808 TCTATTGGGTGGAAAGGA 218825 ||| ||||| ||||| Sbjct 904907 TCTGCACGGTGGCAAGGA 904924 >seq27 Length=1024085 Score = 87.8 bits (96), Expect = 4e-12 Identities = 211/316 (67%), Gaps = 5/316 (2%) Strand=Plus/Plus Query 252090 GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAA 252149 |||| |||| || || ||||| | ||||||| ||||||| |||||| || | | Sbjct 811168 GTCCGTGATGTACGTGTCCAGCAGCACAGAGTACGTCTCCGAGTGGATGTTCTCCATCAT 811227 Query 252150 CATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTT 252209 || |||| | | ||||| ||||| || | | || || | ||| | Sbjct 811228 CAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTG 811287 Query 252210 TGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGAT 252269 |||| ||||| || || ||||| |||||||| || |||||| |||| | | |||||| Sbjct 811288 CGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGAT 811347 Query 252270 GAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG 252329 |||||| ||||| ||||||| ||| | | |||||| ||||| | ||| Sbjct 811348 GAAGTGCCGCTCCCCGTCGTTCAGCGTTGC---CCAGTCCTTCATGTCGTTGCCCAGGTC 811404 Query 252330 AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCG-AACACATCAG 252388 | || ||||||||||||| | | || || ||||||| ||||| | | ||| Sbjct 811405 GATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC-TTGCGCCAGATGTCAT 811463 Query 252389 GGTACTTGATTGGGAA 252404 |||||| ||||||||| Sbjct 811464 GGTACTGGATTGGGAA 811479 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||||||| ||| ||||| | ||||||||||||||| || | || Sbjct 810590 TCGAAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 810649 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||| ||||| | ||| || | || | | ||||| || || ||||| | Sbjct 810650 GAGCGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATG 810709 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | |||||||||||||| || || | || || |||||| Sbjct 810710 TACTGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATG 810769 Query 251743 AATTC 251747 || || Sbjct 810770 AACTC 810774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836325910276