Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq28 309 6e-79 seq22 288 2e-72 seq27 122 2e-22 >seq28 Length=1171705 Score = 309 bits (342), Expect = 6e-79 Identities = 1129/1730 (65%), Gaps = 73/1730 (4%) Strand=Plus/Minus Query 243735 CCACGCTGAACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTC 243793 ||||| |||||| || || || || || |||||||||| | ||||||||| | ||| ||| Sbjct 332278 CCACGGTGAACTTGATCGCGTCCGCCG-CGGCCTTGGTGCGCAGGTAGTAGACGCCAGTC 332220 Query 243794 TTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTT 243853 || |||||| |||| | || | |||||| ||| | || | ||| | Sbjct 332219 TTCAGTCCAGCTTCCCAGCAATAGAAGAGCATGGACGTGATCTGG-----CCGGAGGTGG 332165 Query 243854 GGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGC 243913 || || | | || |||||||| || ||||| |||||| | | | | | || Sbjct 332164 GGCTC----TGG---AGGAAGAGGTTCAGCGACTGCGACTGGTCAATGTACTGGCCGCGG 332112 Query 243914 TCTGCG-GCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972 || ||| |||||| || || | ||| | ||||| || | ||| ||| | Sbjct 332111 TC-GCGTGCCATGTCTATCAGCTTGCGCTGTGGAATCTCCCACACGGTCCGGTAAAGCTC 332053 Query 243973 CTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTG 244032 | | |||| || || | || | || | | | ||||| |||| | ||||| || Sbjct 332052 CCTCAGGTCGTCCGGCATGCCGTTAATAGTGAGGATAGAGCCGTTGTAGGAGATGATCTC 331993 Query 244033 GGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCG-CCTCGACCAGGTGCCTGT 244091 | | ||||| |||||||| || || | |||| | | || ||| |||| | ||| Sbjct 331992 GTTCCGCATCGACTCGTTCCATAGACC-ACGCGCAATAAGGTCCATGACGAGGTACTTGT 331934 Query 244092 TCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCT 244151 |||| || | ||||| || |||||| ||||| ||||| ||| | ||| |||| Sbjct 331933 TCACAACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTCGAGGTGAAGGGCT 331874 Query 244152 CGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCA 244211 ||| || ||| | ||||| || ||||||| ||| ||| || |||||||| | |||| Sbjct 331873 CGAAGCACTCGTTATTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAACCA 331814 Query 244212 GCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTC--TGAGCTCGTTCCAGTCCC 244268 |||| ||| | || ||| | ||| || | || |||| | |||||||| Sbjct 331813 GCAGGGAGTTGCGCATGCC---CACCTGCATCACCTTCTCCTTGAGGCTGGCCCAGTCCC 331757 Query 244269 ACATGCCCGAGA-GGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 | || | || || |||||| ||||||||| |||||||| | |||| | Sbjct 331756 AGCGACCGCTGTTGGGCCGCGCGTTCTT----CCACATGTCGAACTGCAGAATGCCCTCG 331701 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCT- 244386 ||| | ||||||||| | ||||| ||| || || || || ||||||| || | Sbjct 331700 CTGGCCGGGCTGCCCGTGAAGGTCTCGTACGGGCCATCCTCCTTCGCCAGCTC-CATCGA 331642 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT-GTTCATGTCGCGG-GCC 244444 | |||| || || ||||||| || ||||||||| ||| ||||| ||| | ||| Sbjct 331641 CGACTCGACAGCAGCAAAGTAGATCGTTTCGAAGATC-TCTGCGTTCACC-CGCTGCGCC 331584 Query 244445 TT-GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503 | |||| || || || | | ||| | |||||| |||| || || ||||||||||| Sbjct 331583 TCCGCCG-AGACAAACGGCAGTCGCATGAGGATGAAGGCGTCCGCGAGCCCCTGCACGCC 331525 Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG-CATGGCTTCGGGCACGGGGTAAAAGT 244562 || ||||||||| | || ||| |||| ||| | | | || | || ||||| ||| Sbjct 331524 GAGGCCGATGGGGCGGTTGCGCATGTTACTGCGGCGCGCCGTCTCG-ACCGGGTAGTAGT 331466 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCG--GACGACGTCGGCCAGCAG 244620 ||| ||| || ||| ||| ||||| || |||||| ||| | | ||| | || || Sbjct 331465 TGCGGTCAATAACCCGGTTTAGGTTACGTGTGATC-TGCTTTGTC-ACGGTGTAGAGAAG 331408 Query 244621 CTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGC 244680 ||| || | |||| || || ||| | || | || || || Sbjct 331407 CTGGTGGTTGAACTCACGCTTCTCAACGTCGACG-----------AAGCGCGGC-AGCGC 331360 Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740 || | ||| |||||||| || ||| ||||| | ||||||| ||||||||| || Sbjct 331359 GATGGAGGCGAGGTTGCACACCGCCGTCTCCTGTGGCGACGTGTACTCGACAATCTCCGT 331300 Query 244741 GCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 ||| ||||| ||||||||| ||||| || | || || || |||||| |||||| || Sbjct 331299 GCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGC 331240 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860 |||||||||||| | ||| ||||| || ||||||| ||| | | |||| ||| Sbjct 331239 GTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATAGCAAACCA 331180 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAG 244920 | ||| |||| || |||| || | |||||| | ||||||||| ||| || Sbjct 331179 CACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAG 331120 Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAG 244980 ||| ||||| || || ||| || || ||||||| || ||| || Sbjct 331119 CCGCTCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTGGGATCCATCAG 331060 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCC-TCTGCATGAAGAGGTCGGGGATCCAGAGGGCCT 245039 |||||| || || || || | ||| ||| || || || |||||||| || || | Sbjct 331059 CGTCCACTTCCCCTCGCTTTTCACACGTCT-CATAAACAGATCTGGGATCCACAGCGCGT 331001 Query 245040 GGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGT 245099 ||||||||| | || | ||| || || || ||||| ||||| || |||| Sbjct 331000 AGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGC 330941 Query 245100 CAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGC 245159 |||||||||| ||||||||||||| | ||||| |||| |||||| ||||| || Sbjct 330940 CAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGC 330881 Query 245160 CTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATG 245215 | |||||||||| | | || ||| |||||||| ||| || | ||||| | Sbjct 330880 CGCCCTGGTCCA----CGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGC 330825 Query 245216 CCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATG 245275 ||||| || |||||| || || |||||| |||| ||| | | || || || || Sbjct 330824 CCGTTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCC--GCCGC-GCGGATGTTG-TG 330769 Query 245276 GACATG----CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTC 245331 || || || | |||||||| ||| ||| | ||| || ||| | ||||| Sbjct 330768 CACGTGCAGACCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCTTCAGCGTGTC 330709 Query 245332 TGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGG 245391 ||||| || |||||||| |||| | ||| ||||| ||| || || || Sbjct 330708 GTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGG 330649 Query 245392 CTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGC 245441 ||| ||| ||| | ||| || || || ||| |||||||||| ||| ||| Sbjct 330648 CTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGC 330599 >seq22 Length=704707 Score = 288 bits (318), Expect = 2e-72 Identities = 591/867 (68%), Gaps = 15/867 (2%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| ||||||||| || ||||||| || | || || || |||||| | Sbjct 499880 ATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTG 499821 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 |||||||| ||||||| ||| |||| | | ||||| ||| || || | Sbjct 499820 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAAYGCTGAACGACGGGGAGCGG 499761 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 ||| |||| || | || ||||||||||||| | ||||||||||||| ||||| Sbjct 499760 CACTTCATCAAGCACGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAAT 499701 Query 42465 CTGGC-CACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 || || || | | ||||||| || ||| || ||||||||| |||||||| || Sbjct 499700 CTTGCGCAGC-GCTTCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTT 499642 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 |||| | || |||||| | ||||| ||| |||| | ||||| |||||||||| Sbjct 499641 CCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACAT 499582 Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643 | ||| || ||| | ||||| | || || ||||||| || |||||| | Sbjct 499581 CACGGACAGCGAGGAGAAGCTGCGACTGTTGCACGCAATACAGACGATCCCGTGCATCCA 499522 Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703 ||||||||||| ||||| | ||||||| ||| || || | | ||| | ||| | Sbjct 499521 AAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGCAGCG-CG-AGCTTTCAG-GAGCG 499465 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 |||| | | |||| |||| || |||||||| ||||| || || | ||| | | | || Sbjct 499464 GCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTT 499405 Query 42764 CTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 |||||| ||| || ||| | |||||| || || || ||| ||||| |||||| Sbjct 499404 CTGGCTGAAGAAGCGCGGTCT-GATGCCGGGGCTGACGTTCAGCAACGAGCTCATCTCGC 499346 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT---TCTCGAGCCACCTCAGGC 42879 | |||||||| || || | |||||| || ||||| |||| |||| ||| ||| || Sbjct 499345 GCGACGAGGGCCTACACACGGACTTCGCATGCCTGCTGTACAACTCG---CACATCAAGC 499289 Query 42880 ACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 |||||| || ||||| || | || |||||| ||| || ||| | |||||| | Sbjct 499288 ACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTGGATGCGGTGAACATCGAGCGCG 499229 Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 ||||| || | ||||||| ||| ||| | ||||||||| || || ||| Sbjct 499228 AGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCGC 499169 Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTAC 43058 |||||||| ||| |||||| |||| || || ||| | || || | | |||| Sbjct 499168 AGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAG-CACTAC 499110 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 | || || || |||||||| ||||||| |||||| || ||||||| || ||||| Sbjct 499109 CGCTCGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTC 499050 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||| || | || |||||| Sbjct 499049 TTCGAGAAGARGGTGGGGGAGTACCAG 499023 >seq27 Length=1024085 Score = 122 bits (134), Expect = 2e-22 Identities = 209/301 (69%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| ||||||||| || ||||||| || | || || || |||||| | Sbjct 811473 ATCCAGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTG 811414 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 |||||||| ||||||| ||| |||| | | ||||| | ||| || || | Sbjct 811413 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAACGCTGAACGACGGGGAGCGG 811354 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 ||| |||| || | || ||||||||||||| | ||||||||||||| ||||| Sbjct 811353 CACTTCATCAAGCACGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAAT 811294 Query 42465 CTGGC-CACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 || || || | | ||||||| || ||| || ||||||||| |||||||| || Sbjct 811293 CTTGCGCAGC-GCTTCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTT 811235 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 |||| | || |||||| | ||||| ||| |||| | ||||| |||||||||| Sbjct 811234 CCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGGACACGTACAT 811175 Query 42584 C 42584 | Sbjct 811174 C 811174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338775047360