Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq22 118 2e-21 seq27 104 5e-17 >seq22 Length=704707 Score = 118 bits (130), Expect = 2e-21 Identities = 272/407 (67%), Gaps = 7/407 (2%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 || || || ||| | ||||||||| |||||||| | || |||||| ||| ||| Sbjct 499445 GTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGT 499386 Query 243379 GTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACC 243436 ||||||| || || || || | |||||| ||||| |||||||||||||| ||| Sbjct 499385 CTGATGCCGGGGCTGACGTTCAGC--AACGAGCTCATCTCGCGCGACGAGGGCCTACACA 499328 Query 243437 AACAGTTCGGTGAGCTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAAACGG 243493 | |||| || |||| || | || || ||||||| || ||| | Sbjct 499327 CGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG 499268 Query 243494 TCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTC 243553 | | |||||| || || || | | ||| || ||||| |||||||| | | Sbjct 499267 TGCTGGAGATCATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGC 499208 Query 243554 CATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCG 243613 | ||||| |||||||||||| | || || |||| ||||||||||| ||||| || | Sbjct 499207 CGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCGCAGTACATCGAGTTCGTCGCGG 499148 Query 243614 ACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCT 243673 |||| | | | |||| || | ||||| ||| ||| | | | || || | || Sbjct 499147 ACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCGCTCGACGCAGCCGTTCGACT 499088 Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 | |||||| | || ||||| || || ||||| ||||||||||| ||| Sbjct 499087 TCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTCGAGAAG 499041 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 243532 GAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGA 243591 || ||||| |||||||| | || ||||| |||||||||||| | || || |||| Sbjct 498777 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCG 498718 Query 243592 CAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTAC 243651 ||||||||||| ||||| || ||||| | | | |||| || | ||||| ||| Sbjct 498717 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTAC 498658 Query 243652 AACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTC 243711 ||| | | | || || | ||| |||||| | || ||||| || || ||||| |||||| Sbjct 498657 CGCTCGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTC 498598 Query 243712 TTCGAAAAG 243720 ||||| ||| Sbjct 498597 TTCGAGAAG 498589 >seq27 Length=1024085 Score = 104 bits (114), Expect = 5e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 243532 GAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGA 243591 || ||||| |||||||| | || ||||| |||||||||||| | || || |||| Sbjct 810774 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATGGCG 810715 Query 243592 CAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTAC 243651 ||||||||||| ||||| || ||||| | | | |||| || | ||||| ||| Sbjct 810714 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTAC 810655 Query 243652 AACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTC 243711 ||| | | | || || | ||| |||||| | || ||||| || || ||||| |||||| Sbjct 810654 CGCTCGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTC 810595 Query 243712 TTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATGA 243754 ||||| ||| | || | || || || | | || || ||||||| Sbjct 810594 TTCGAGAAGAGGGTGGGGGAGTACCAGAAGGCC-GGCGTGATGA 810552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879491296600