Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq28 316 2e-81 seq22 156 4e-33 seq27 113 4e-20 seq9 91.5 1e-13 seq36 89.7 5e-13 seq31 87.8 2e-12 >seq28 Length=1171705 Score = 316 bits (350), Expect = 2e-81 Identities = 604/868 (70%), Gaps = 25/868 (3%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTC 153655 || || || || || || || || |||||||| | |||| || |||||| || ||||| Sbjct 331361 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGTGGCGACG-TGTACTCGACAATCTC 331303 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715 | ||| ||||| ||| || || ||| | ||| | ||| || |||| ||||| Sbjct 331302 CGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCA 331243 Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA--AAC 153773 ||||| ||| |||| | | |||| || || ||||||| || | || | |||| || Sbjct 331242 TGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATAGCAAA 331183 Query 153774 CTATGCAGGTCCTGCGCTCGCACCCGCT-GCCGATAGCGGCCCTCGCTCTCGTATCGCTC 153832 | | || ||||| || | | | || | || |||||||||| |||||| ||||| Sbjct 331182 CCA--CACCTCCTGGGCCTGGATCGTCTTGACGCC-GCGGCCCTCGGACTCGTAGCGCTC 331126 Query 153833 GTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACAC-TGATGCGGAC 153891 ||| || ||||||||||| || || ||||| ||| ||| || || ||| || || ||| Sbjct 331125 GTAGAGCCGCTCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTG-GGAT 331067 Query 153892 ACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGA 153951 |||||||| |||| | | ||| || || |||| ||| |||||||| || | ||| | Sbjct 331066 CCATCAGCGTCCACTTCCCCTCGCTTTTCACACGTCTCATAAACAGATCTGGGATCCACA 331007 Query 153952 GCGCGTACATGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATT 154009 ||||||| | |||||||| |||| || || || ||| ||||||||||||| Sbjct 331006 GCGCGTAGAAGAGGTCGCGGGCGCGCTG--GTCATCTTTTCCCGTGTTGCGTTTCAGCAG 330949 Query 154010 GAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACG 154069 || | || | ||| ||| ||||||||||| || | |||||||| | ||| || || || Sbjct 330948 CAGAAAGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCG 330889 Query 154070 CTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTC 154126 ||| |||||||| || |||| ||| | | |||||||||||||| | ||| || | Sbjct 330888 CTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCAC 330829 Query 154127 CAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATG 154186 || ||| | | |||||||| || | || | |||||| ||||| | | || Sbjct 330828 GAGCCCGTTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTG 330769 Query 154187 CACGTTAACGCCAATGCCGCC-GCCGTACTTTGAT-ATGGCAGCGCAGTCGCCCAGCGTC 154244 ||||| | ||||||||||| |||| ||||| | || | || || || |||||| Sbjct 330768 CACGTGCAGACCAATGCCGCCGGCCG--CTTTGCTGATCACGGCACACTCCTTCAGCGTG 330711 Query 154245 CTGTAGATGCCGTCGATGCTATCGT-CGCGGACGCCGAGCAAGAAACACGAACACATTTG 154303 |||||||||||||||||| || | | |||||| | || ||| ||||| | |||||| Sbjct 330710 TCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCC-ACCAGGAAGCACGAGCTCATTTG 330652 Query 154304 CGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGT-AAACAGTTTTTGGC 154362 ||| | | || || || ||||||||| || | ||||| || || || |||| Sbjct 330651 CGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGG- 330593 Query 154363 TCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGA 154422 ||| | | |||||| || | | | || ||| ||||||||||||| || |||| Sbjct 330592 ACATAAGGTCGTACGTCTCACGCACATTCTTGAGATCTGCGCCGTGAATGCCAAGAGCGA 330533 Query 154423 CGCGCATGAGCATGTGCTGCGGACGTTC 154450 | ||||||| ||| ||||| || || || Sbjct 330532 CACGCATGAACATCTGCTGTGGGCGCTC 330505 >seq22 Length=704707 Score = 156 bits (172), Expect = 4e-33 Identities = 349/514 (68%), Gaps = 13/514 (3%) Strand=Plus/Minus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG 52388 |||||| | | || ||||| ||||||| || |||||||| |||| | ||| | | Sbjct 499532 CCGTGCATCCAAAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGC---AGCGCGA-G 499477 Query 52389 CTGGCCG-AGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTT 52447 || | | |||| || | | ||| ||| || |||||| | || |||||||| || Sbjct 499476 CTTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTT 499417 Query 52448 TGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGA 52507 ||| | || | | || | | || | ||||| || ||||||||||||||||| Sbjct 499416 CTGCGCGCTGTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGGCTGACGTTCAGCAACGA 499357 Query 52508 GTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCG 52567 | | || ||||||||||| || || ||||||||||| || ||||| ||||| ||| Sbjct 499356 GCTCATCTCGCGCGACGAGGGCCTACACACGGACTTCGCATGCCTGCTGTACAACTCGCA 499297 Query 52568 CGTGACCGAAAAATTGGATTCGGA-CACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTA 52626 | | | | || || || | || | ||| || || ||| |||||| | Sbjct 499296 CATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAG-ATCATCGTGGATGCGGTGAACA 499238 Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686 |||| ||||| | | |||||||||||| |||| | |||||||||||| || Sbjct 499237 TCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGC 499178 Query 52687 CCATGTGCG-AGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA 52745 ||| ||| ||||||||||||| || ||||| || ||| ||||| |||||| || Sbjct 499177 TGATG-GCGCAGTACATCGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAG 499119 Query 52746 AAGTACTTCAACGCTCG--CAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCA 52803 ||| ||| | |||||| | ||||| || || ||| | | || ||||| |||||| Sbjct 499118 AAGCACT--ACCGCTCGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCA 499061 Query 52804 AGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | || ||||| ||||||||| || || ||||| Sbjct 499060 AAACGAACTTCTTCGAGAAGARGGTGGGGGAGTA 499027 Score = 109 bits (120), Expect = 5e-19 Identities = 142/192 (74%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 52649 CGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGT 52707 |||||||||||| |||| | |||||||||||| || ||| ||| |||||||||||| Sbjct 498763 CGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATG-GCGCAGTACATCGAGT 498705 Query 52708 TTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCG--CAA 52765 | || ||||| || ||| ||||| |||||| || ||| ||| | |||||| | Sbjct 498704 TCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACT--ACCGCTCGACGCA 498647 Query 52766 TCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCG 52825 ||||| || || ||| | | || ||||| ||||||| || ||||| ||||||||| Sbjct 498646 GCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTCGAGAAGAA 498587 Query 52826 AGTCGGCGAGTA 52837 || || ||||| Sbjct 498586 GGTGGGGGAGTA 498575 >seq27 Length=1024085 Score = 113 bits (124), Expect = 4e-20 Identities = 143/192 (74%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 52649 CGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGT 52707 |||||||||||| |||| | |||||||||||| || ||| ||| |||||||||||| Sbjct 810760 CGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATG-GCGCAGTACATCGAGT 810702 Query 52708 TTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCG--CAA 52765 | || ||||| || ||| ||||| |||||| || ||| ||| | |||||| | Sbjct 810701 TCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACT--ACCGCTCGACGCA 810644 Query 52766 TCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCG 52825 ||||| || || ||| | | || ||||| ||||||| || ||||| ||||||||| | Sbjct 810643 GCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTCGAGAAGAG 810584 Query 52826 AGTCGGCGAGTA 52837 || || ||||| Sbjct 810583 GGTGGGGGAGTA 810572 >seq9 Length=588727 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | |||||||| || ||||||||||| Sbjct 369548 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 369607 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || || || |||| |||| || ||||| |||||||| || Sbjct 369608 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 369667 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| ||| |||||| Sbjct 369668 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCAC 369727 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||| | || | ||| || || ||||| || || || || |||||||||| Sbjct 369728 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 369777 >seq36 Length=2713245 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445 ||||||| |||| |||| || | || | | |||||||| || ||||||||||| Sbjct 1385842 AGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCG 1385901 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || || ||||| || || || |||| |||| || ||||| |||||||| | Sbjct 1385902 AGAGYGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCG 1385961 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | || || || ||||| ||| || || | | || | |||||| ||| ||||| Sbjct 1385962 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCA 1386021 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||| || || ||||| || || || || |||||||| Sbjct 1386022 CCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1386070 >seq31 Length=1531288 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | ||||| || || ||||||||||| Sbjct 938091 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCYTTCTGGATGTTGTAGTCCGA 938150 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || || || |||| |||| || ||||| |||||||| || Sbjct 938151 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 938210 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| ||| |||||| Sbjct 938211 GATGCCCTCCTTGTCCTGGATCTTSGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCAC 938270 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||| | || | ||| || || ||||| || || || || |||||||||| Sbjct 938271 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 938320 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | ||||| || || ||||||||||| Sbjct 938580 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCYTTCTGGATGTTGTAGTCCGA 938639 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || || || |||| |||| || ||||| |||||||| || Sbjct 938640 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 938699 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| ||| |||||| Sbjct 938700 GATGCCCTCCTTGTCCTGGATCTTSGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCAC 938759 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||| | || | ||| || || ||||| || || || || |||||||||| Sbjct 938760 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 938809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262176681920