Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq28 125 7e-24 seq31 111 1e-19 seq9 111 1e-19 seq36 105 6e-18 >seq28 Length=1171705 Score = 125 bits (138), Expect = 7e-24 Identities = 565/881 (64%), Gaps = 51/881 (6%) Strand=Plus/Minus Query 146635 GCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAA----TACTGCACAAT 146690 ||||| ||||| | ||| || || || ||||| | || || | |||| ||||| Sbjct 331361 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCT----GTGGCGACGTGTACTCGACAAT 331306 Query 146691 CTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTT--ACTAAACTTG 146748 ||| | ||| ||||| ||||||||| |||| | ||| || ||||| ||| || Sbjct 331305 CTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGC--TG 331248 Query 146749 TTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATG 146808 ||||| | |||||||||||| | | |||| || || || |||| | | ||| | ||| Sbjct 331247 TTGCATGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGAT- 331189 Query 146809 AATCTAAACAAATCTC-TGGCCTTTACTTGTCTTT-CGTACAGTTTATTCTTTTCGTATT 146866 | | || || | ||| ||| | | | ||||| || | | ||||| Sbjct 331188 -AGCAAACCACACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGC 331130 Query 146867 TCTCGTACAATATTTCAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGG 146926 |||||| | ||||| ||| || ||| ||| || || || | |||| Sbjct 331129 GCTCGTAGAGCCGCTCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTGG 331070 Query 146927 GACAGAACAGCGACCATTCTTTATTCTCCTT-CACGCGTTCCATAAACAAATCGGGAATC 146985 || | ||||| ||| | | || | || ||| ||| |||||||| ||| || ||| Sbjct 331069 GATCCATCAGCGTCCACT-TCCCCTCGCTTTTCACACGTCTCATAAACAGATCTGGGATC 331011 Query 146986 CAAAG-GCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAA 147044 || || || || | | |||||| || ||| || ||| |||||||| ||| Sbjct 331010 CACAGCGCGTAGAAG-AGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCA- 330953 Query 147045 GTTGAGGACATCGTAA-ATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTT 147103 | | || | | || | || | ||||| ||||| | || |||||| ||||| | Sbjct 330952 GCAGCAGAAAGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCT 330893 Query 147104 TTCGCTTACCGCC---CTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGG 147160 | ||||||||||| ||| || |||| ||| | |||| |||||||| |||| ||| | Sbjct 330892 TGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTG 330833 Query 147161 ACACGAGGCCGCCGGATTTTGTGGTGCCGTTG--------TATTGAGC----------GC 147202 |||||| ||| || | |||||||| ||| ||| || Sbjct 330832 GCACGAGCCCG------TTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGC 330779 Query 147203 TGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGT 147262 || | | |||||| ||| || | || ||| || || |||| || |||| | Sbjct 330778 GGATGTTGTGCACGTGCAGACCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCT 330719 Query 147263 GCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTT-GATGCATTGCAGGAAACACGAA 147321 || || | ||||||||||||||||||||||||||| || || |||||| ||||| Sbjct 330718 TCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCAC-CAGGAAGCACGAG 330660 Query 147322 CACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTG 147381 | |||||| || ||||| || ||| || || ||| ||||||| ||||| | Sbjct 330659 CTCATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAG 330600 Query 147382 CCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCC 147441 ||| ||| | | ||||| ||| | || | | || ||||||||||| | Sbjct 330599 CCCTTGGACATAAGGTCGTACGTCTCACGCACATTCTTGAGATCTGCGCCGTGAATGCCA 330540 Query 147442 AGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAAT 147482 || ||||| ||||||| ||| ||||| || || ||| |||| Sbjct 330539 AGAGCGACACGCATGAACATCTGCTGTGGGCGCTCCACAAT 330499 >seq31 Length=1531288 Score = 111 bits (122), Expect = 1e-19 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || Sbjct 938092 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCYTTCTGGATGTTGTAGTCCGAG 938151 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 938152 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 938211 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||| | ||| || Sbjct 938212 ATGCCCTCCTTGTCCTGGATCTTSGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 938271 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | | | ||| ||||||||||| || || || || |||||||||| Sbjct 938272 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 938320 Score = 111 bits (122), Expect = 1e-19 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || Sbjct 938581 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCYTTCTGGATGTTGTAGTCCGAG 938640 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 938641 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 938700 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||| | ||| || Sbjct 938701 ATGCCCTCCTTGTCCTGGATCTTSGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 938760 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | | | ||| ||||||||||| || || || || |||||||||| Sbjct 938761 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 938809 >seq9 Length=588727 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || Sbjct 369549 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 369608 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 369609 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 369668 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 369669 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 369728 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | | | ||| ||||||||||| || || || || |||||||||| Sbjct 369729 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 369777 >seq36 Length=2713245 Score = 105 bits (116), Expect = 6e-18 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || Sbjct 1385844 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1385903 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 1385904 AGYGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1385963 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 1385964 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACC 1386023 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | | | ||| ||||||||||| || || || || |||||||| Sbjct 1386024 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1386070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500586024640