Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq28 316 3e-81 seq26 194 2e-44 >seq28 Length=1171705 Score = 316 bits (350), Expect = 3e-81 Identities = 853/1295 (66%), Gaps = 25/1295 (2%) Strand=Plus/Plus Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 ||| |||||||| || ||||| | ||||||||||| || | | || | || || Sbjct 1091989 CGTCGAGAAGATCTGGCTCTTCTTGGTCGGAATCGTCGTGTTGCGCTTGATCAGCGCCGT 1092048 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||| | || || || |||| || || | ||| || |||||||||| || | ||| Sbjct 1092049 CATCACGCCGCCGGCCGTCTCGATGCCCAGCGTCAGCGGCGTCACGTCCAGCAGCAGCAG 1092108 Query 6988 GTCTTGAACAGATTCGTTCCCTT--CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 | | | | | | | | ||| | ||||| | |||| ||| || |||| ||| ||| Sbjct 1092109 GCCCTC--CGTCTGCTTGCTCTTGCCGCCCGTCAGGATGAAGGCCTGCACCGCCGCGCCG 1092166 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || ||||| ||||| |||||||| || | || ||||| || || ||| || | ||| Sbjct 1092167 TACGCGACAGCCTCGTCGGGGTTGATGCTCTTGTTCAGCTCCTTGCCGCCGAAGAAGTCC 1092226 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | || | |||||||| || || || || || |||| || | || | | Sbjct 1092227 GACACGAGGGACTGCACCTTCGGGATGCGCGTTGACCCGCCCACCAGCACCACGTCGTGC 1092286 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 || || || ||||| | ||| | || || || || | || | Sbjct 1092287 ACGGAGCGCTTGTCCATCTTCGCGTCCTGCAGCACGCGCTCCACCGGCTGGATCGTGCTG 1092346 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||||| ||| ||||| ||||| || || || || || |||| | | || ||| Sbjct 1092347 CGGAACAGGTCGCCGCACAGCTCCTCGAAGCGCGCGCGCGTGATGGTGGCCTGAAAGTCA 1092406 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 ||| ||| | | || || || || || || | || | || || || | ||| ||| Sbjct 1092407 ACGTTCTCGAACAGCGCGTCGATCTCGATCGTCGCCTGCGTCGCGGACGACAGCGTGCGC 1092466 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTAC-CGGAAATATC 7404 || |||||||| |||||||| || | ||| || || || || || | || | || Sbjct 1092467 TTCGCGCGCTCGCACGCCGTGCGCAGACGGCGCAGCGCGCGGTGGCTCGACGCCAGGTTC 1092526 Query 7405 TTTCTTATGTT--TACGTTTAAACTCTTCAGAGAAG----TGTCGAAGGAGTCTCGAATC 7458 || | |||| | || || ||||| || | |||| || ||| | || || Sbjct 1092527 TTACCCTTGTTCTTGCGCTTGAACTCCTCGGTGAAGAACGTGACGAGGCGGTTG----TC 1092582 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 ||| || || || || | ||| || || || ||||| || || || ||||| || || Sbjct 1092583 GAAGTCCTCGCCGCCAAGGTGCGTGTCGCCGTTCGTCGCCTTCACCTCGAAGATGCCGCC 1092642 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 || || | |||| || ||||| ||||| || || || ||||| || || || ||||| Sbjct 1092643 GTCGATCGTCAACAGCGTCACATCGAACGTGCCGCCGCCAAGGTCGAAGATCAGCACGTT 1092702 Query 7579 CGTATCGT---CGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | |||| | | ||| || || ||||||||||| ||||||||||| || || Sbjct 1092703 GCGCTCCTTGCCGTCGTCGCCCTTGTCCAGGCCGTACGCGATGGCCGCCGCCGTCGGCTC 1092762 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || || || || | |||||||||||| || | || || ||||| || || || Sbjct 1092763 GTTGATGATGCGCAGCACCTCCAGGCCAGCAATCGTGCCGGCGTCCTTCGTTGCCTGGCG 1092822 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||||| ||||| ||||| ||||| ||||| || || || | | | || | ||| || || Sbjct 1092823 CTGCGAGTCGTTGAAGTACGCCGGCACCGTCACCACGGCCTTCTTCACCTGCTTGCCCAG 1092882 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 |||| ||||| | || ||||| || || |||||||| ||||| || | || Sbjct 1092883 GTACGCCTCCGCCGTCTCCTTCATCTTCAGCAGCACCATCGAGCTGATCTCCTCCGGCGT 1092942 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATC--CGCAGCACCG 7873 || ||| || ||| | | || |||||||||| || || ||| | || Sbjct 1092943 GAAGGTCTTCTCCTCGCCGCGGTACTGCACCGCAATCATGGGCTTGTCGTCGC-CCTTCG 1093001 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 | | ||||| ||| ||| | ||||| || || || ||| ||||| Sbjct 1093002 TCG-TCACCTTGAACGGCCAGTGCTTCATGTCCGACTGCACAACCGAGTCGTTGAACTTG 1093060 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | || || || ||||| || || || || ||||| | |||||||| || |||||| Sbjct 1093061 CGGCCAATCAGGCGCTTCGCGTCGAACACCGTGTTGTGCGGGTTCATTGCCACCTGGTTC 1093120 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 ||||| || || ||||| || || || ||||| ||||| |||||||| || ||| Sbjct 1093121 TTCGCGGCATCGCCGATCAGGCGCTC---CGAGTCCGTGAACGCAACGTACGACGGTGTC 1093177 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACG 8113 || || || || ||||||||||| || || || ||||| ||||| ||||| ||||| ||| Sbjct 1093178 GTGCGGTTGCCCTGGTCGTTCGCGATGATATCCACGCGTTCGTTCTGCCACACGCCCACG 1093237 Query 8114 CACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||||| ||||| || || | || || ||||| || Sbjct 1093238 CACGAGTACGTCGTGCCCAGGTCGATGCCGATGGC 1093272 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 8045 GATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAG 8104 || || ||||| || || || ||||||||||| || || || ||||| ||||| ||||| Sbjct 1072163 GACGGTGTCGTGCGGTTGCCCTGGTCGTTCGCGATGATATCCACGCGTTCGTTCTGCCAC 1072222 Query 8105 ACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||||| |||||||| ||||| || || | || || ||||| || Sbjct 1072223 ACGCCCACGCACGAGTACGTCGTGCCCAGGTCGATGCCGATGGC 1072266 Score = 82.4 bits (90), Expect = 1e-10 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 7619 GCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCA 7678 ||||||||||| || || || || || || || | |||||||||||| |||||||| Sbjct 1101478 GCCGCCGCCGTCGGCTCGTTGATGATGCGCAGCACCTCCAGGCCAGCAATCGTTGCCGCC 1101537 Query 7679 TCTTTCGT-CGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737 | || || |||| | || |||| |||||| ||||| ||||| ||||| || || || | Sbjct 1101538 GCCTTGGTACGCTCG-CGCTGCGCATCGTTGAAGTACGCCGGCACCGTCACCACGGCCTT 1101596 Query 7738 CGTGACTTTCTTACCGAGATAC 7759 | | || | ||| || || ||| Sbjct 1101597 CTTCACCTGCTTGCCCAGGTAC 1101618 >seq26 Length=1058257 Score = 194 bits (214), Expect = 2e-44 Identities = 468/699 (67%), Gaps = 17/699 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || || | ||| || || ||||||||||| || || || || | || Sbjct 411691 TCGAAGTCCTCGCCCCCAAGGTGCGTGTCGCCCGCGGTCGCCTTCACCTCGAACACGCCG 411632 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | |||| || ||||| ||||| || || || ||||| || ||||| ||| Sbjct 411631 GACTCGATCGTCAACAGCGTCACATCGAACGTGCCGCCGCCAAGGTCGAAGATGAGCACG 411572 Query 7577 TTCGTATCGTC---GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 ||| | || | |||| || || | |||||||||||||| || || || || Sbjct 411571 TTCTTCTCTCCCTTGTCTCCCTTGCGGTCCATGCCGTACGCGATAGCGGCGGCGGTGGGC 411512 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || || || || ||| |||||||| || | | || || |||||||| || Sbjct 411511 TCGTTGATGATGCGCAGCACGTTGAGGCCAGCGATGGAGCCGGCGTCCTTCGTCGCCTGG 411452 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || ||||| ||||| ||||| |||||||| || | ||| |||||| |||| || | ||| Sbjct 411451 CGCTGCGAGTCGTTGAAGTACGCCGGGACGGTGATGACGGCGTCCTTGACGGTCGTGCCG 411392 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813 || || | ||||| | || ||||| || || ||||| | || ||||| || | Sbjct 411391 AGGTAGGCCTCCGCCGTCTCCTTCATCTTCTGCAGCACCATAGCCGAGATCTCCTCTG-G 411333 Query 7814 GCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC 7872 | ||| || || | | | | || || || | || || ||| | Sbjct 411332 GAAAAAGGTCTTGGACTGGTTCTGGTACTCGACGCTGATGACCGGCTT-GCCG--TCCTT 411276 Query 7873 GGGGATAACCTTATACGACCAATCTTTCATAT-CGTCT--TGGACCTGTTGGTCCGAAAA 7929 | | | ||||| | | ||| | ||||| | || || || | | | ||| || Sbjct 411275 GACGGTCACCTTGAAGGGCCAGTGCTTCATGTCCGACTGAAGGTCAGGATCGTC---GAA 411219 Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989 ||| | ||||| | ||||| || ||||| || ||||| | ||||||||||| || Sbjct 411218 CTTGCGGCCGATCATGCGCTTCGCGTCAAACACGGTGTTGCTCGGGTTCATGGCCACCTG 411159 Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049 ||||||||| || || ||||| || || || | || || || || || || || || Sbjct 411158 GTTCTTCGCGGCATCGCCGATCAGGCGCTC---TGTCTCGGTGAAGGCCACATAGGACGG 411102 Query 8050 GGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCC 8109 ||||| || || || |||||||| |||||||| || || | ||||| | ||||||| Sbjct 411101 TGTCGTGCGGTTACCCTGGTCGTTGGCAATAATGTCCACCTGCTCGTTCTTGAAGACGCC 411042 Query 8110 GACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||||||| ||||| || || | || || ||||| || Sbjct 411041 CACGCACGAGTACGTCGTGCCCAGGTCGATGCCGATGGC 411003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132514190240