Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq6 145 6e-30 seq31 93.3 3e-14 >seq6 Length=529559 Score = 145 bits (160), Expect = 6e-30 Identities = 402/610 (66%), Gaps = 20/610 (3%) Strand=Plus/Minus Query 29787 CTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGT 29846 ||||||||| | ||| || | | ||||| | |||||||||| ||||| || ||||| Sbjct 384269 CTCGAGCTGCGACTTGAGGGCACCGACGTGGTTGCGGTAGACGTGGGCGTCACCAAGGGT 384210 Query 29847 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29906 ||| |||| ||| || || || || || | | || || | | ||||| || | Sbjct 384209 GTGCACAAGCTCACCGGGCCGCAGGCCCGTCGCCTTGGCAATGAGGATGGTGAGCAGCGC 384150 Query 29907 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 29966 |||| ||||||||| || || || ||||| |||||||| | ||| | |||||| ||| Sbjct 384149 GTAGGAGGCGATGTTGAAAGGGACGCCGAGACCCATGTCGCACGAGCGCTGGTACAGCAT 384090 Query 29967 ACACGAGAGCTC-------TCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAG 30019 || || ||||| ||||| | ||||||| || ||| | ||||||||| | Sbjct 384089 GCAGGATAGCTCGCTCGTGTCCGT-GTTCACGTAGAATTGAGCAAGCAAGTGGCACGGCG 384031 Query 30020 GAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTT 30079 | || ||||| || | ||||||||||| | | | ||| | ||| | Sbjct 384030 GCAGCGCCATCTTTTGCAGCGCGCACGGGTTCCAGGCAGTGAATAGAAGGCGGCGGTCGT 383971 Query 30080 CTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA-G 30138 ||||| | |||| |||||| | | ||| |||||||| || ||| | Sbjct 383970 TCGGGTTCGCCTTGATCGTCTCCACGATGGACCTGATCTGGTCCACCCCT-TCGCCGTCG 383912 Query 30139 TAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACC 30198 |||| || | || |||| ||||| ||||| || | ||||||||| ||||| || Sbjct 383911 TAGTTCGCTTCAAACCCCTTGTAATCTGCCCCGAAGTGGCGCCACTGGAAGCCGTAGACA 383852 Query 30199 GGTCCCAGGTC----TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCT 30254 || || ||||| ||| | ||| |||| ||||| | |||| | ||| || | Sbjct 383851 GGGCCGAGGTCCATCTCCTTATTCTCTGTC----AAGCCGCGGCTGTCGAGAAACTCGCG 383796 Query 30255 GGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA 30314 || |||||| |||||||||| | | |||| || | ||| | | ||| || Sbjct 383795 CGAGCCGTTGCCGTCCCAGATGTGAATGTCCTTGTCCGCCAGCAGCTGCGCGTTCGTCTC 383736 Query 30315 CCCTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCG 30373 ||| | | |||||||||||||||||| ||| ||| | ||| ||||| | ||| |||| Sbjct 383735 CCCGCGCAGGAACCACAGCAGCTCCTCGCAC-ACGCCGCGCCAGAAGACACGCTTCGTCG 383677 Query 30374 TGAGGAGGGG 30383 | || || || Sbjct 383676 TCAGCAGCGG 383667 >seq31 Length=1531288 Score = 93.3 bits (102), Expect = 3e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 52112 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 52171 ||||||||||||||||||| || ||||| | ||||| |||||||||||||||||||| Sbjct 40266 CCAGGAGGACATGCCCTTCAACCGCGACGGCATCGTGCCGGACCTCATCATCAACCCCCA 40207 Query 52172 CGCCTTTCCATCCAGGATGACCGT 52195 |||| |||| ||| | ||||| || Sbjct 40206 CGCCATTCCCTCCCGCATGACGGT 40183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617420719028