Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq28 239 8e-58 seq22 199 7e-46 seq27 98.7 2e-15 >seq28 Length=1171705 Score = 239 bits (264), Expect = 8e-58 Identities = 964/1491 (65%), Gaps = 47/1491 (3%) Strand=Plus/Minus Query 212694 AGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCG-GCCATGTCTATGAT 212752 |||||||| ||||| |||||| ||| | || | | ||| ||| ||||||||||| | Sbjct 332150 AGGTTCAGCGACTGCGACTGGTCAATGTACTGGCCGCGGTC-GCGTGCCATGTCTATCAG 332092 Query 212753 ATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCC 212812 | | ||| | | ||||||||||||| | | | || | ||||| || || | ||| Sbjct 332091 CTTGCGCTGTGGAATCTCCCACACGGTCCGGTAAAGCTCCCTCAGGTCGTCCGGCATGCC 332032 Query 212813 GGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCA 212872 | || | | | ||| || ||| | | | || ||||| ||||||||| Sbjct 332031 GTTAATAGTGAGGATAGAGCCGTTGTAGGAGATGATCTCGTTCCGCATCGACTCGTTCCA 331972 Query 212873 GAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932 || || | | ||| | |||| |||| ||| || | |||| || || Sbjct 331971 TAGACCACGCGCAATAAGGTCCATGACGAGGTACTTGTTCACAACAGGGAACTCGCCGCT 331912 Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 ||||| | | ||| | ||| || ||| ||||||||| || |||||| || || || Sbjct 331911 CAGCACACGGCGGACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAG 331852 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTG 213052 |||||| | ||| || || |||||||| || ||||| || ||| | || || Sbjct 331851 AATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAACCAGCAGGGAGTTGCGCATGCCCAC 331792 Query 213053 CTCGCCGATGAGG--CGCC--GAAGCTCTGCCCAGTCCCATCTGCCAGACA-GGTCCTCG 213107 || || || | | || || ||| ||||||||||| | || || || || Sbjct 331791 CT-GC--ATCACCTTCTCCTTGAGGCTG-GCCCAGTCCCAGCGACCGCTGTTGGGCCGCG 331736 Query 213108 TCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAA 213167 | ||| ||||||||||| ||||||| ||||| | ||| | ||||||||| | | Sbjct 331735 -CGTTC---TTCCACATGTCGAACTGCAGAATGCCCTCGCTGGCCGGGCTGCCCGTGAAG 331680 Query 213168 GAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAG 213227 | ||| ||||||| |||||| |||||||| |||| || | ||||| ||||| Sbjct 331679 GTCTCGTACGGGCCATCCTCCTTCGCCAGCTCCATCGACGACTCGACAGCAGCAAAGTAG 331620 Query 213228 ATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATC 213287 || ||||| || ||||| ||| | | || ||||| | || || |||| | Sbjct 331619 ATCGTTTCGAAGATCTCTGCGTTCACCCGCTGCGCCTCCGCCGAGACAAACGGCAGTCGC 331560 Query 213288 ATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGG 213347 ||| | ||| | || || |||||||| || |||| ||||||||| | || | || | Sbjct 331559 ATGAGGATGAAGGCGTCCGCGAGCCCCTGCACGCCGAGGCCGATGGGGCGGTTGCGCATG 331500 Query 213348 TTAGACTT-GGAGCACTC-CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGT 213405 ||| || || || | ||| | ||||| |||||| ||| || | | ||| |||| Sbjct 331499 TTA--CTGCGGCGCGCCGTCTCGACCGGGTAGTAGTTGCGGTCAATAACCCGGTTTAGGT 331442 Query 213406 TGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAAC--ACGTAGCCCC- 213462 | || ||| | || || || | || || ||| |||||| ||| | | Sbjct 331441 TACGTGTGATCTGCTTTGTCACGGTGTAGAGAAGCTGGTGGTTGAACTCACGCTTCTCAA 331382 Query 213463 CGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAG 213522 |||| || || ||||| |||||| ||| |||||||| || ||| |||||| | Sbjct 331381 CGTCG---ACGAAGCGCGGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGTG 331325 Query 213523 AGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCT 213582 |||||||| | ||||| ||||| ||||| ||| ||| ||||| || |||| Sbjct 331324 GCGACGTGTACTCGACAATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCT 331265 Query 213583 GGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTA 213642 ||||| ||||| |||| | ||||||||||| | | | || || ||||| | Sbjct 331264 TCTGGTTCGACTTGCTGTTGCATGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGA 331205 Query 213643 GCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTC 213702 ||| ||| |||| || ||| | | | ||||| || | | |||| || Sbjct 331204 TCTGAGACTCCAGGATAGCAAACCACACCTCCTGGGCCTGGATCGTCT---TGAC-GCCG 331149 Query 213703 CGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGA---CCCTG 213758 ||| | | | |||||| | ||||||||| | || || | || || | ||| Sbjct 331148 CGGCCCTCGGACTCGTAGCGCTCGTAGAGCCGCTCAAACTCTTCACCATAGCAATCGCTG 331089 Query 213759 TCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTC-T 213817 || ||||| || | |||| ||| || |||| | ||| || | | || | | Sbjct 331088 ---AGACCCGGGCACGTGTTGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGT 331032 Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTC 213877 || ||| ||||| || |||| |||||||||| ||| ||||| | || | | || || Sbjct 331031 CT-CATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATC 330973 Query 213878 CACTCCAGAGTT---TTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTC 213934 ||| | ||| ||| |||| |||||| |||||| ||| |||||||| ||||| Sbjct 330972 TTTTCCCGTGTTGCGTTTCAGCAGC---AGAAAGCCAAAGACGTCAGCGTGCCAGGGCTC 330916 Query 213935 CATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGCCAC 213991 | |||| ||| ||||||||| | ||| ||||||||||||||| | ||| Sbjct 330915 GAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGT 330856 Query 213992 CATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTAT 214051 ||||||||| ||| || | || || |||||||| ||| ||||| || || ||||| Sbjct 330855 GTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTAT 330796 Query 214052 ATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGA 214111 || ||| | || | | |||| || | || || ||||| ||||| ||| Sbjct 330795 GTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGACCAATGCCGCCGGCCGCTTTGCT 330736 Query 214112 GATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162 ||||| ||| || | ||| || || ||||||| | |||||||| || Sbjct 330735 GATCACGGCACACTCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTC 330685 >seq22 Length=704707 Score = 199 bits (220), Expect = 7e-46 Identities = 567/859 (66%), Gaps = 23/859 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| |||||||| | ||||| |||||||| || || |||| || |||||| |||| Sbjct 499023 CTGGTACTCCCCCACCYTCTTCTCGAAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTC 499082 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||| || | | | | || | | ||| | | ||||||| Sbjct 499083 CATGAAGTCGAACGGCTGCGTCGAGCGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAG 499142 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | ||||||||| |||||||||| | | ||| || ||||||||| || || Sbjct 499143 CCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCG 499202 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| |||| || | || ||||| ||| || | ||| || ||| | | |||| Sbjct 499203 CACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACGATGATCTC 499262 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGC---AGGTGCTTGGCATAGAGCATGCAGGC 48135 | ||||| ||| || ||| || | |||| | || |||| ||| || Sbjct 499263 CAGCACGCG---CTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCATGC 499319 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| |||| | ||| ||||| || ||||||| ||||| ||| || || || Sbjct 499320 GAAGTCCGTGTGTAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCCGG 499379 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | || || |||||||| | || ||| || || || ||||| ||||| Sbjct 499380 CATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCC 499439 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 |||||| || || || || | |||| ||| | ||||| || || || |||||| Sbjct 499440 CTCCACCGCGGCAAAGCCGATCAGCCGCTC-CTGAAAG-CTCGCGCTGCTC-CCGATCCA 499496 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 | ||||| || |||||||| | |||||| || ||||||| ||| || | || || Sbjct 499497 CCGCACAGCCCACTCCGCCTTCTTTTGGATGCACGGGATCGTCTGTATTGCGTGCAACAG 499556 Query 48376 CTTCTTGCA--CTCACCT-GC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 | ||| || ||| || ||||| | || || |||||| | |||| ||| Sbjct 499557 ----TCGCAGCTTCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAGCACAGAGTACGTCT 499612 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || | ||||||||||||||| || | ||||| ||||| Sbjct 499613 CCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCT 499672 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 ||| || | ||| | || | |||||||| ||||||| || || | || | Sbjct 499673 TCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGA 499732 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT--CCAGCC 48609 |||||||||| || || || | ||| || ||||| || | | ||| || |||| | Sbjct 499733 AGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTT--CAGCRTTGCCCAGTC 499790 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA-CGCGAGTGCTTTTT 48668 || | ||| ||||||||||| | || ||||| ||||||| | | | | ||| | | Sbjct 499791 CTTCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGC-TCCT 499849 Query 48669 TGTACATGCCCCATATGTC 48687 ||||| ||| ||| ||||| Sbjct 499850 TGTACTTGCGCCAGATGTC 499868 Score = 89.7 bits (98), Expect = 1e-12 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 48457 CTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAG 48516 ||||||||||||||| || | ||||| ||||| ||| || | ||| | || | Sbjct 500094 CTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGC 500153 Query 48517 CAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAA 48576 |||||||| ||||||| || || | || ||||||||||| || || || | ||| Sbjct 500154 AAGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAA 500213 Query 48577 ATGGCGCTCGTTGTGGGTGAGAGCATT--CCAGCCCTGTACGTCTTTGCCCAGGTCCACT 48634 || ||||| || | | |||||| |||| ||| | ||| ||||||||||| | Sbjct 500214 GTGCCGCTCCCCGTCGTT--CAGCATTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATC 500271 Query 48635 TCTTCCACAGTCCAGAAGGA-CGCGAGTGCTTTTTTGTACATGCCCCATATGTC 48687 || ||||| ||||||| | | | | ||| | |||||| ||| ||| ||||| Sbjct 500272 TCCTCCACCGTCCAGATGCAGCTCTCCTGC-TCCTTGTACTTGCGCCAGATGTC 500324 >seq27 Length=1024085 Score = 98.7 bits (108), Expect = 2e-15 Identities = 189/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 48413 AGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAG 48472 |||||| | |||| |||| ||||| | ||||| || | ||||||||||||||| Sbjct 811187 AGCAGCACAGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAAC 811246 Query 48473 GCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACT 48532 || | ||||| ||||| ||| || | ||| | || | |||||||| ||||| Sbjct 811247 GCGCGCGCCTCTGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACT 811306 Query 48533 ATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGG 48592 || || || | || ||||||||||| || || || | ||| || ||||| || | Sbjct 811307 ATGCCGTCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCG 811366 Query 48593 GTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAG 48652 | || | |||| ||| | ||| ||||||||||| | || ||||| ||||||| | Sbjct 811367 TTCAGCGTTGCCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATG 811426 Query 48653 GA-CGCGAGTGCTTTTTTGTACATGCCCCATATGTC 48687 | | | ||| | |||||| ||| ||| ||||| Sbjct 811427 CAGCTCTCCTGC-TCCTTGTACTTGCGCCAGATGTC 811461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532380810240