Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq28 168 1e-36 seq22 159 6e-34 >seq28 Length=1171705 Score = 168 bits (186), Expect = 1e-36 Identities = 543/826 (66%), Gaps = 35/826 (4%) Strand=Plus/Minus Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818 ||||| || || ||||| ||||||||| || || || | || || || ||||||| Sbjct 331307 ATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTG 331248 Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||| |||||||||||||| | || || || || ||||| | ||||| | |||| || Sbjct 331247 TTGCATGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATA 331188 Query 221879 TTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCA 221935 ||| | || |||| || || ||||||| | | |||||| || | Sbjct 331187 GCAAACCACACCTC-CTGGGCCTGGA--TCGTCTTGACGCCGCGGCCCTCGGACTCGTAG 331131 Query 221936 TACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG 221995 | || |||||| ||||||| |||||| || ||| || || || ||| || Sbjct 331130 CGCTCG---TAGAGCCGCTCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTG 331074 Query 221996 GCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCC-TCTGCATGAAGAGGTCCGG 222054 |||| |||||| |||| | | | | ||| || | ||| ||| || || || || Sbjct 331073 TTGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGTCT-CATAAACAGATCTGG 331015 Query 222055 GATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTT---TTT 222111 |||||||||||| | ||||| || | || ||||| || || || |||| ||| Sbjct 331014 GATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTT 330955 Query 222112 CCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGC 222171 | ||| || ||| |||| | |||||||||||| ||||| ||||||||||| | || Sbjct 330954 CAGCAG---CAGAAAGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGC 330898 Query 222172 GCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAG 222231 ||| ||||| ||| ||||| ||||| | | |||||||| ||| || Sbjct 330897 GCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAG 330838 Query 222232 GGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTA-CGCACCGCCGGCCC 222290 | || || || ||||| || ||||| || || ||||| | ||||| || | Sbjct 330837 CATTGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCC-GCGC 330779 Query 222291 TCAGGTT----ACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAG 222346 | ||| || ||||| || || || ||||| ||| ||||| ||| || Sbjct 330778 GGATGTTGTGCACGTGCAGA----CCAATGCCGCCGGCCGCTTTGCTGATCACGGCACAC 330723 Query 222347 CTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTT-GACGTTCAGCAGAAAACA 222405 ||| || ||||| |||||| || || ||| ||||| |||| || ||| || || Sbjct 330722 TCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACG-CCACCAGGAAGCA 330664 Query 222406 AGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAA 222465 || ||| || | || | || | ||||||||| || || || ||||||| || || Sbjct 330663 CGAGCTCATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAA 330604 Query 222466 GTAGCCCCTAGACATCAGATCGTACGTCTCTACG---ACTCTGGCGATGTTGTCCCCGTG 222522 | ||||| | ||||| || ||||||||||| ||| | ||| | ||| | | ||||| Sbjct 330603 GAAGCCCTTGGACATAAGGTCGTACGTCTC-ACGCACATTCTTGAGATCT--GCGCCGTG 330547 Query 222523 AATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACA 222568 ||| | ||| | |||| |||| | ||| || | ||||||| Sbjct 330546 AATGCCAAGAGCGACACGCATGAACATCTGCTGTGGGCGCTCCACA 330501 >seq22 Length=704707 Score = 159 bits (176), Expect = 6e-34 Identities = 367/539 (68%), Gaps = 21/539 (4%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCC 25569 |||||| | || ||||| || |||| ||| |||||| | | |||| | ||| | | Sbjct 499830 CTGGACGGTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAAYGCTGAA--C 499773 Query 25570 AAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATA 25629 | | |||| ||| || ||||| ||||| | || ||||| || | | || || ||| Sbjct 499772 GACGGGGAGCGGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATA 499713 Query 25630 GTGAACGAGAATCTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTG---GAGGC-CA 25684 || | ||||||||| |||| || | |||| || || ||| || ||| ||||| | Sbjct 499712 GTCATCGAGAATCT-TGCGCAGCGCTTCATGAGCGACGTGAAG---GTGCCAGAGGCGCG 499657 Query 25685 AGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGC 25744 | ||| |||||| |||||| || || || || | ||||| ||| ||| | || Sbjct 499656 CGCGTT-CTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGC 499598 Query 25745 TTCTGATGACGTACATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAG 25803 | ||| |||||||| || ||| || |||| || | || ||||| || || || Sbjct 499597 TGCTGGACACGTACATCACGGACAGCGAGGAGA-AGCTGCGACTGTTGCACGCAATACAG 499539 Query 25804 CACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC 25863 || || ||||| | | ||||||| |||||| || ||||||| ||| ||| Sbjct 499538 ACGATCCCGTGCATCCAAAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGC---AGC 499482 Query 25864 GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGT 25923 || | ||| ||||||||| | | |||||| || ||||||||||| || || ||| Sbjct 499481 GCGAGCTTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGG 499422 Query 25924 TCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTC 25982 ||||| |||| | | |||||||| ||| || || ||||| |||||| || Sbjct 499421 TCGTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGGCTGACGTTCAG 499363 Query 25983 CAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||||||||||| | |||||||| || |||| || || || |||||||| |||| Sbjct 499362 CAACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGACTTCGCATGCCTGCTGTACA 499304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844382019840