Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq28 100 3e-16 >seq28 Length=1171705 Score = 100 bits (110), Expect = 3e-16 Identities = 546/862 (63%), Gaps = 11/862 (1%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||||||| | ||||||||||| ||||| | ||||| ||||| | ||| | | ||| Sbjct 330510 CCCACAGCAGATGTTCATGCGTGTCGCTCTTGGCATTCACGGCGCAGATCTCAAGAATGT 330569 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 ||||| |||||| |||||| | || | |||| ||||| || || |||||||| Sbjct 330570 GCGTGAGACGTACGACCTTATGTCCAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTT 330629 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 || || || || || | ||||| ||| | |||||||| | || ||||| || Sbjct 330630 TAACGCCGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTGGTGGCGTCGAAGGAAGA 330689 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATC-TCAAAGTGGGCTG 75449 | ||| |||| ||||| | || || | ||||||||| ||| ||||| ||| | Sbjct 330690 CAGCATCGACGGCATCTACGACACGCTGAAGGAGTGTGCCGTGATCAGCAAAG-CGGCCG 330748 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGC-CAATAAATCTCGTATTCGGGGGACA 75508 | || ||||| ||||| | || | | | || | || || || || Sbjct 330749 GCGGCATTGGTCTGCACGTGCACAACATCCGCGCGGCGGGCAGCT-ACATAGCTGGTACG 330807 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || || || | || | | |||||||| ||||| || ||| ||| || ||||| Sbjct 330808 AACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTAC 330867 Query 75569 GTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 || | || | || || |||||||| || |||| ||||| | || || ||||| Sbjct 330868 GTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTATCTCGAGCCCTGGCAC 330927 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 || || || | | || || | | || |||| || | || || || Sbjct 330928 GCTGACGTCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCC 330987 Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || ||||| | | |||||||| ||||| || || |||| || | ||| || | Sbjct 330988 CGCGACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTATGAGACGTG-TGAAAAGCGA 331046 Query 75746 GGTCAA-TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTGGGTG 75803 || || ||| | || | ||| ||| | || |||||| ||| || | |||| Sbjct 331047 GGGGAAGTGGACGCTGATGGATCCCAACACGTGCCCGGGTCTCAGCGATTGCTAT-GGTG 331105 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTAC 75863 | |||||||| |||||| || || ||||| | | | ||| | | Sbjct 331106 AAGAGTTTGAGCGGCTCTACGAGCGCTACGAGTCCGAGGGCCGCGGCGTCAAGACGATCC 331165 Query 75864 CAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATA 75923 ||| || || ||| ||||| || | || |||| ||||| ||| || | Sbjct 331166 AGGCCCAGGAGGTGTGGTTTGCTATCCTGGAGTCTCAGATCGAGACGGGAGGGCCGTTCG 331225 Query 75924 TGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGA 75983 | || |||||||| || || |||| ||| ||||| |||||| | || || |||||| Sbjct 331226 TCCTCTACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAATCTTGGCACGATCAAGT 331285 Query 75984 GCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCA 76043 |||| || || |||||||| ||| | |||||||| | |||||||| || |||| Sbjct 331286 GCTCGAACCTATGCACGGAGATTGTCGAGTACACGTCGCCACAGGAGACGGCGGTGTGCA 331345 Query 76044 ATTTGGCATCAATCGCCCTTCC 76065 | | || || ||||| || || Sbjct 331346 ACCTCGCCTCCATCGCGCTGCC 331367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569331543680