Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq28 183 4e-40 seq27 161 1e-33 seq22 158 1e-32 seq31 96.9 4e-14 >seq28 Length=1171705 Score = 183 bits (202), Expect = 4e-40 Identities = 210/280 (75%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| |||||||| || |||| ||| |||||||| ||||| |||||||| ||||| Sbjct 330879 GCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTT 330820 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCG-GCAA 1630180 ||| |||||| || || || | |||| ||| || ||||| | |||||| || ||| Sbjct 330819 CGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAG 330760 Query 1630181 AGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGC 1630240 | || ||||||||||||| ||| ||| | || |||| || |||||||||||||||| Sbjct 330759 A-CCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGC 330701 Query 1630241 CCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCG 1630300 | ||||| ||| ||||| |||| || |||||||| ||||||| | || | Sbjct 330700 CGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGG 330641 Query 1630301 TGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAA 1630340 |||||||||| ||||| || || || || |||||| || Sbjct 330640 TGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAA 330601 >seq27 Length=1024085 Score = 161 bits (178), Expect = 1e-33 Identities = 223/309 (72%), Gaps = 5/309 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||| | | |||||| ||||| || ||||||| ||||||||| Sbjct 810563 GCCTTCTGGTACTCCCCCACCCTCTTCTCGAAGAAGTTCGTTTTGCCCTGCAGCGAGATC 810622 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||| | |||||| | | || ||||||||| || ||||||||| | Sbjct 810623 ATCTCCATGAAGTCGAACGGCTGCGTCGAGCGGTAGTGCTTCTCCTCGCCGAGCGACACC 810682 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| ||||| |||||||||||||| ||| || | ||||||||||| || Sbjct 810683 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGCGTTCATGCCAATC 810742 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| ||||||||||| |||| | ||||| |||||| | || || || |||||| Sbjct 810743 AGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACGATG 810802 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTG---TTGACGAGCATCGTGTAGAGCAGGCA 868986 |||| || | | || ||| || ||||| |||| | || |||| |||||||| Sbjct 810803 ATCT-CCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCA 810861 Query 868987 GGCAAAGTC 868995 || ||||| Sbjct 810862 TGCGAAGTC 810870 Score = 150 bits (166), Expect = 2e-30 Identities = 212/298 (71%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || | |||||| ||||| || || | | |||||| ||| | Sbjct 811206 CCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCT 811265 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 || || ||||||| || || || |||||| || |||||||||||| |||||| Sbjct 811266 TCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGA 811325 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || ||||||||||| ||||| ||||| ||||| | |||| |||||| Sbjct 811326 AGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCGTTGCCCAGTCCT 811385 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||||| || ||||| | |||||| | |||||||| || ||| || |||| Sbjct 811386 TCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGT 811445 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 || | ||| | | ||||| |||| ||||||||||| ||||| ||||| || Sbjct 811446 ACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGGAATGGGTTCTC 811503 >seq22 Length=704707 Score = 158 bits (174), Expect = 1e-32 Identities = 222/309 (72%), Gaps = 5/309 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||| | |||||| ||||| || ||||||| ||||||||| Sbjct 499018 GCCTTCTGGTACTCCCCCACCYTCTTCTCGAAGAAGTTCGTTTTGCCCTGCAGCGAGATC 499077 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||| | |||||| | | || ||||||||| || ||||||||| | Sbjct 499078 ATCTCCATGAAGTCGAACGGCTGCGTCGAGCGGTAGTGCTTCTCCTCGCCGAGCGACACC 499137 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| ||||| |||||||||||||| ||| || | ||||||||||| || Sbjct 499138 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGCGTTCATGCCAATC 499197 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| ||||||||||| |||| | ||||| |||||| | || || || |||||| Sbjct 499198 AGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACGATG 499257 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTG---TTGACGAGCATCGTGTAGAGCAGGCA 868986 |||| || | | || ||| || ||||| |||| | || |||| |||||||| Sbjct 499258 ATCT-CCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCA 499316 Query 868987 GGCAAAGTC 868995 || ||||| Sbjct 499317 TGCGAAGTC 499325 Score = 156 bits (172), Expect = 5e-32 Identities = 222/309 (72%), Gaps = 5/309 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||| | |||||| ||||| || ||||||| ||||||||| Sbjct 498566 GCCTTCTGGTACTCCCCCACCTTCTTCTCGAAGAAGTTCGTTTTGCCCTGCAGCGAGATC 498625 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||| | |||||| | | || ||||||||| || ||||||||| | Sbjct 498626 ATCTCCATGAAGTCGAACGGCTGCGTCGAGCGGTAGTGCTTCTCCTCGCCGAGCGACACC 498685 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| ||||| |||||||||||||| ||| || | ||||||||||| || Sbjct 498686 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGCCATCAGCTCCGCGTTCATGCCAATC 498745 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 ||| ||||||||||| |||| | ||||| |||||| | || || || |||||| Sbjct 498746 AGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCATCCACGATG 498805 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTG---TTGACGAGCATCGTGTAGAGCAGGCA 868986 |||| || | | || ||| || ||||| |||| | || |||| |||||||| Sbjct 498806 ATCT-CCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCA 498864 Query 868987 GGCAAAGTC 868995 || ||||| Sbjct 498865 TGCGAAGTC 498873 Score = 147 bits (162), Expect = 3e-29 Identities = 211/298 (71%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || | |||||| ||||| || || | | |||||| ||| | Sbjct 499613 CCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCT 499672 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 || || ||||||| || || || |||||| || |||||||||||| |||||| Sbjct 499673 TCACGTCGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGA 499732 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || || ||||||||||| ||||| ||||| ||||| | ||| |||||| Sbjct 499733 AGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCRTTGCCCAGTCCT 499792 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||||| || ||||| | |||||| | |||||||| || ||| || |||| Sbjct 499793 TCATGTCGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGT 499852 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 || | ||| | | ||||| |||| ||||||||||| ||||| ||||| || Sbjct 499853 ACTTGCGCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGGAGCGGGTTCTC 499910 Score = 134 bits (148), Expect = 2e-25 Identities = 205/292 (70%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 869637 GGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGACCT 869696 |||||||||| || | |||||| ||||| || || | | |||||| ||| | || | Sbjct 500075 GGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCTGGCACCTTCACGT 500134 Query 869697 CCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAG 869756 | ||||||| || || || |||||| || |||||||||||| ||||||| || | Sbjct 500135 CGCTCATGAAGCGCTGCGCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAGAAGG 500194 Query 869757 CCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGGTGT 869816 | || ||||||||||| ||||| ||||| ||||| | ||| |||||| ||| Sbjct 500195 CAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCATTGCCCAGTCCTTCATGT 500254 Query 869817 CGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCT 869876 || || ||||| | |||||| | |||||||| || ||| || |||||| | Sbjct 500255 CGTTGCCCAGGTCGATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGTACTTGC 500314 Query 869877 CCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 ||| | | ||||| |||| ||||||||||| ||||| ||||| || Sbjct 500315 GCCAGATGTCATGGTACTGGATTGGGAAGAGGACGTAGCGGAGCGGGTTCTC 500366 Score = 102 bits (112), Expect = 1e-15 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||||| || | || || ||||| || ||||||||| Sbjct 499336 CCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGCCCCGGCATCAGACCGCGCTTC 499395 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || | |||||||| || || || || |||||||| || ||||||||| Sbjct 499396 TTCAGCCAGAACAGCGCGCAGAACGACCCGGAAAAGAAAATGCCCTCCACCGCGGCAAAG 499455 Query 869300 CCGATGAGCCGCTC 869313 ||||| |||||||| Sbjct 499456 CCGATCAGCCGCTC 499469 >seq31 Length=1531288 Score = 96.9 bits (106), Expect = 4e-14 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 732350 CGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTCTCCAACCA 732409 |||| || ||||| | | || ||||| ||||| ||||| ||||||| | ||||||| Sbjct 41025 CGAGATGGACCCGTCGATGATTCTCGGCATTTGCGCCTCCATTATCCCGTACCCCAACCA 40966 Query 732410 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAG 732455 ||||||| | |||||||||| ||||||| | |||||||| |||||| Sbjct 40965 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAG 40920 Score = 93.3 bits (102), Expect = 5e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 507103 GGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 507162 ||||||| | ||||| ||| | || || | |||||||| | |||||||||||||| | Sbjct 1283714 GGAGCGGCTGAAGGGGAAGTACGGCCGGCTGCGCGGCAACTTGATGGGCAAGCGCGTAGA 1283655 Query 507163 CTTTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGT 507222 |||| | || ||| | ||||||| | |||||| | |||||| | || || || ||||| Sbjct 1283654 CTTTTCGGCCCGCACGGTCATCACCGGCGACCCAAACATCGACGTCGATGAAGTCGGCGT 1283595 Query 507223 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGA 507266 || | ||| || |||||| ||||| || || || |||| Sbjct 1283594 ACCGTTCTCCGTCGCCATGACGCTGACCTTCCCGGAACGGGTGA 1283551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136245671412