Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq36 96.9 2e-15 seq31 95.1 8e-15 seq9 95.1 8e-15 >seq36 Length=2713245 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| ||| || || |||||||| || ||||| ||||| | || || Sbjct 1385861 CACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGYGTGCGGCCCTCCTC 1385920 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||| |||||||| || |||| | || || ||||| Sbjct 1385921 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 1385980 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| |||| | | || | |||||||| | ||||| || | || |||||| | Sbjct 1385981 GATCTTCGCCTTCA-CGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCT 1386039 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || || | ||| || || ||||||||||| || Sbjct 1386040 TGCCGGTCAGCGTCTTCACGAAGATCTGCATTGT 1386073 >seq31 Length=1531288 Score = 95.1 bits (104), Expect = 8e-15 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| ||| || || |||||||| || ||||| ||||| | || || Sbjct 938109 CACCAGGTGCAGCGTGGACTCYTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTCCTC 938168 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||| |||||||| || |||| | || || ||||| Sbjct 938169 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 938228 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| | | || | |||||||| | ||||| || | || |||||| | Sbjct 938229 GATCTTSGCCTTCA-CGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCT 938287 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGT 33760 | || || | ||| || || ||||||||||| || | |||| Sbjct 938288 TGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTGGCGGTGT 938329 Score = 95.1 bits (104), Expect = 8e-15 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| ||| || || |||||||| || ||||| ||||| | || || Sbjct 938598 CACCAGGTGCAGCGTGGACTCYTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTCCTC 938657 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||| |||||||| || |||| | || || ||||| Sbjct 938658 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 938717 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| | | || | |||||||| | ||||| || | || |||||| | Sbjct 938718 GATCTTSGCCTTCA-CGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCT 938776 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGT 33760 | || || | ||| || || ||||||||||| || | |||| Sbjct 938777 TGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTGGCGGTGT 938818 >seq9 Length=588727 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| ||| || || |||||||| || ||||| ||||| | || || Sbjct 369566 CACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTCCTC 369625 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||| |||||||| || |||| | || || ||||| Sbjct 369626 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 369685 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| |||| | | || | |||||||| | ||||| || | || |||||| | Sbjct 369686 GATCTTCGCCTTCA-CGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTCT 369744 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || || | ||| || || ||||||||||| || Sbjct 369745 TGCCGGTCAGCGTCTTCACGAAGATCTGCATGGT 369778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703855781120