Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq28 120 3e-22 seq36 98.7 1e-15 seq9 96.9 4e-15 seq31 93.3 4e-14 >seq28 Length=1171705 Score = 120 bits (132), Expect = 3e-22 Identities = 241/354 (68%), Gaps = 5/354 (1%) Strand=Plus/Plus Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATAC 7794 |||||||||||||||||||| ||| |||||||| || || ||| || |||| Sbjct 330685 GAAGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGTGCCGTGATCAGCAAAGCG 330744 Query 7795 GGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCC 7854 | |||||| || |||||| |||| || || | ||||| || ||| ||| | Sbjct 330745 GCCGGCGGCATTGGTCTGCACGTGCACAACATCCGCGCGGCGGGCAGCTACATAGCTGGT 330804 Query 7855 ACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGA 7914 || ||||| | | | ||| | | ||| ||| | ||||| ||||| ||| | | || Sbjct 330805 ACGAACGGCACGTCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGC 330864 Query 7915 CATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGG 7971 | || |||||| || || |||||||| |||||| ||| ||||| | ||||| ||| Sbjct 330865 TACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTATCTCGAGCCCTGG 330924 Query 7972 CACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAA 8030 ||||| ||| | | | | || ||| ||||||| ||| || || |||| Sbjct 330925 CACGCTGACGTCTTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGC-G 330983 Query 8031 AGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084 || ||||| || |||| || ||||| | || |||||||||||||| || || Sbjct 330984 CGCCCGCGACCTCTTCTACGCGCTGTGGATCCCAGATCTGTTTATGAGACGTGT 331037 >seq36 Length=2713245 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||||| ||||| || ||||||||||| | ||| | Sbjct 1385853 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGYGTGCGG 1385912 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 1385913 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 1385972 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || ||||| || || | Sbjct 1385973 TTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCG 1386032 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| | || || ||||| || |||||| || Sbjct 1386033 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATTGTG 1386074 >seq9 Length=588727 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||||| ||||| || ||||||||||| | ||| | Sbjct 369558 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGG 369617 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 369618 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 369677 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || ||||| || || | Sbjct 369678 TTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCG 369737 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 369738 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 369775 >seq31 Length=1531288 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||||| || || || ||||||||||| | ||| | Sbjct 938101 AGGCGCAGCACCAGGTGCAGCGTGGACTCYTTCTGGATGTTGTAGTCCGAGAGCGTGCGG 938160 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 938161 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 938220 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || ||||| || || | Sbjct 938221 TTGTCCTGGATCTTSGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCG 938280 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 938281 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 938318 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||||| || || || ||||||||||| | ||| | Sbjct 938590 AGGCGCAGCACCAGGTGCAGCGTGGACTCYTTCTGGATGTTGTAGTCCGAGAGCGTGCGG 938649 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 938650 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 938709 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || ||||| || || | Sbjct 938710 TTGTCCTGGATCTTSGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCG 938769 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 938770 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 938807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398172570720