Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq28 132 6e-26 seq23 86.0 8e-12 seq36 82.4 1e-10 seq24 82.4 1e-10 seq16 82.4 1e-10 >seq28 Length=1171705 Score = 132 bits (146), Expect = 6e-26 Identities = 558/866 (64%), Gaps = 19/866 (2%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || ||||| || || | ||||| || |||||||| | |||||||| | | Sbjct 331367 GGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGTGGCGACGTGTACTCGACA 331308 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || |||| ||| || | ||| ||||| || | |||||| ||||| ||| || Sbjct 331307 ATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTG 331248 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| || ||||||||||| | | | ||| |||||||| |||| || | || ||| Sbjct 331247 TTGCATGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATA 331188 Query 111410 GCCTTCCAAACATCGGCGGC-TGGTACAATGGCGTTG--GCC-CGTCCCTCCGCCTCGTA 111465 || ||| || || ||| ||| || | ||| ||| || ||||| | |||||| Sbjct 331187 GCAAACCACACCTCCTGGGCCTGG----ATCGTCTTGACGCCGCGGCCCTCGGACTCGTA 331132 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGT 111524 |||||| |||||||| ||||| | || ||| |||||| || | ||| Sbjct 331131 GCGCTCGTAGAGCCGCTCAAACTCTTCACC-ATAGCAATCGCTGAGACCCGGGCACGTGT 331073 Query 111525 CTGGACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 ||| | || | ||| || || | | ||| | || |||| || || ||||| Sbjct 331072 TGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTCA-CACGTCTCATAAACAGATCTGGG 331014 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 |||||||| | | ||||| || | || || || | || |||| || Sbjct 331013 ATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTC 330954 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 | | || || | | || || |||||||| ||||| |||||||| |||| | ||| Sbjct 330953 AGCAGCAGAAAGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCC 330894 Query 111704 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 || || || || | || | || ||||| || ||| ||| || ||||| |||||| Sbjct 330893 TTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATT 330834 Query 111761 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTG-GCTCTCAC 111819 || | | || | || || || || || || || | || | | Sbjct 330833 GGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATGT-AGCTGCCCGCCGCGCGGAT 330775 Query 111820 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGA-GATTTGCGCACACTCCGTAA 111878 | || | ||||| ||||| || || ||| ||||| ||| ||||||||| | | Sbjct 330774 GTTGTGCACGTGCAGACCAATGCCGCCGGCCG-CTTTGCTGATCACGGCACACTCCTTCA 330716 Query 111879 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 111938 | || | ||||| |||| ||| ||| ||||| || | |||||||| | || Sbjct 330715 GCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCA 330656 Query 111939 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 111998 | ||||| | || || || || || |||||||| || || ||||| |||| | || | Sbjct 330655 TTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCT 330596 Query 111999 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTG 112058 |||||| |||||| ||||| ||| | | ||| | ||||| ||||| | | Sbjct 330595 TGGACATAAGGTCGTACGTCTCACGCACATTCTTGAGATCTGCGCCGTGAATGCCAAGAG 330536 Query 112059 CGACCCGCATGAACATGTACTGTGGG 112084 |||| ||||||||||| | ||||||| Sbjct 330535 CGACACGCATGAACATCTGCTGTGGG 330510 >seq23 Length=783272 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 229108 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 229049 Query 145344 GGTAGGA 145350 ||||||| Sbjct 229048 GGTAGGA 229042 >seq36 Length=2713245 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 1630403 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 1630344 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 1630343 CAGGTAGGAG 1630334 >seq24 Length=877124 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 658796 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 658855 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 658856 CAGGTAGGAG 658865 >seq16 Length=698404 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 446028 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 445969 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 445968 CAGGTAGGAG 445959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031717385600