Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq28 280 2e-70 seq15 104 3e-17 >seq28 Length=1171705 Score = 280 bits (310), Expect = 2e-70 Identities = 529/757 (70%), Gaps = 22/757 (3%) Strand=Plus/Plus Query 53192 TTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTAC 53251 |||||||| ||||| | || || ||||| | || || | ||| |||||||||||| Sbjct 330523 TTCATGCGTGTCGCTCTTGGCATTCACGGCGCAGATCTCAAGAATGTGCGTGAGACGTAC 330582 Query 53252 GACTTAATGAGCCAAAAG-TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 ||| | ||| |||| | | ||| || |||||||| || ||||| || ||||| || || Sbjct 330583 GACCTTATGT-CCAAGGGCTTCTTCACCCACGCCACCCCGACCCTCTTTAACGCCGGCAC 330641 Query 53311 GAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGATGACTCGATCGA 53367 | || || ||| |||| |||||||||||||| |||||| ||| ||||| Sbjct 330642 CCCGAAGCCGCAAATG---AGCTCGTGCTTCCTGGTGGCGTCGAAGGAAGACAGCATCGA 330698 Query 53368 CGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 |||||||||||| ||||| |||||||||||| ||| ||| | | || || || || Sbjct 330699 CGGCATCTACGACACGCTGAAGGAGTGTGCCGTGATCAGCAAAGCGGCCGGCGGCATTGG 330758 Query 53428 TATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG 53486 | | ||| ||| | ||| |||| ||| |||| || || ||||||||| || Sbjct 330759 TCTGCACGTGCAC-AACATCCGCGCGGCGGGCAGCTACATAGCTGGTACGAACGGCA-CG 330816 Query 53487 CCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAG 53545 ||| || ||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 330817 TCGAACGGGCTCGTGCCAATGCTACGCGTCTTCAACAACACCGCCCGCTACGTGGACCAG 330876 Query 53546 GGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATT 53605 || || || ||||||||||| | |||||| |||| |||||||| |||||||| ||| | Sbjct 330877 GGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTATCTCGAGCCCTGGCACGCTGACGTC 330936 Query 53606 ATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTG 53665 | | ||||| |||| | || ||| | || || |||| ||| ||||| Sbjct 330937 TTTGGCTTTCTGCTGCTGAAACGCAACACGGGAAAAGATGACCAGCGCGCCCGCGACCTC 330996 Query 53666 TT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG-GAGAAG-GACGAGGAG 53722 || ||| || |||||||| || || || || ||| | | ||| || ||| || | | || Sbjct 330997 TTCTAC-GCGCTGTGGATCCCAGATCTGTTTATG--AGACGTGTGAAAAGCGAGGGGAAG 331053 Query 53723 TGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 ||| |||||| || ||| |||||| || ||| | | ||| ||||| |||||| Sbjct 331054 TGGACGCTGATGGATCCCAACACGTGCCCGGGTCTCAGCGATTGCTATGGTGAAGAGTTT 331113 Query 53783 AACGAGATGTATCGGACG-TACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840 | | | || || || |||| ||| | |||||||| | |||| | || |||| | Sbjct 331114 GAGCGGCTCTA-CGAGCGCTACG-AGTCCGAGGGCCGCGGCGTCAAGACGATCCAGGCCC 331171 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 ||||| ||| ||| ||||| || ||| | ||||||||| ||||| | | || Sbjct 331172 AGGAGGTGTGGTTTGCTATCCTGGAGTCTCAGATCGAGACGGGAGGGCCGTTCGTCCTCT 331231 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 ||||||| | |||| ||| ||||||||||| Sbjct 331232 ACAAGGACGCATGCAACAGCAAGTCGAACCAGAAGAA 331268 Score = 116 bits (128), Expect = 4e-21 Identities = 310/462 (67%), Gaps = 25/462 (5%) Strand=Plus/Plus Query 55477 GGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCAT 55536 |||| | |||||||||||||| || || || |||||||||||||| || | ||||| | Sbjct 331794 GGGCATGCGCAACTCCCTGCTGGTTGCCCCCATGCCAACCGCGTCCACCTCGCAGATTCT 331853 Query 55537 GGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG-GACCCTAG 55595 ||||| |||||| |||||||| | ||| | ||||||||| | ||||| | | || Sbjct 331854 CGGCAATAACGAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTCCGCCGTGTGCTGAG 331913 Query 55596 CAGGTGAGTT---TGTCATGATCAACAAGCACCTCGTCAAGGACC----TGCAGAAGATC 55648 | || ||||| ||| || | |||||| ||||||||| ||||| ||| | || Sbjct 331914 C-GGCGAGTTCCCTGT--TG-TGAACAAGTACCTCGTCATGGACCTTATTGCGCGTGGTC 331969 Query 55649 AACAAGTGGAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAAT 55708 | |||||| | ||| || || || | || || || ||| | | Sbjct 331970 TA----TGGAACGAGTCGATGCGGAACGAGATCATCTCCTACAACGGCTCTATCCTCACT 332025 Query 55709 CT---GGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG 55765 | | || || || | |||| |||||||||| |||||||||||||||||| Sbjct 332026 ATTAACGGCATGCCGGACGACCTGAGGGAGCTTTACCGGACCGTGTGGGAGATTCCACAG 332085 Query 55766 AAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTG 55825 | ||||| |||||| || || || |||||| |||||||| ||||| ||| Sbjct 332086 CGCAAGCTGATAGACATGGCACGCGACCGCGGCCAGTACATTGACCAGTCGCAGTCGCTG 332145 Query 55826 AACATCTTCATGGAGA-ATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTG 55884 ||| ||||| | ||| || | | |||| || | | || |||| ||| || | || Sbjct 332146 AACCTCTTCCTCCAGAGCCCCACCTCCGGCC-AGATCACGTCCATGCTCTTCTATTGCTG 332204 Query 55885 GAAGAAG--GGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 | |||| ||||| ||||| || | ||||| ||||| ||| Sbjct 332205 G--GAAGCTGGACTGAAGACTGGCGTCTACTACCTGCGCACC 332244 Score = 107 bits (118), Expect = 2e-18 Identities = 281/423 (66%), Gaps = 12/423 (3%) Strand=Plus/Minus Query 117145 GCTGAACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAAC 117204 ||||||||| || ||||| ||| | || |||| ||| | |||||| | ||| |||| Sbjct 905111 GCTGAACCCGGTGCCGATGCCCGTCGTGCCGTTCACCAGCACCATCGGGATGACCGGAAT 905052 Query 117205 GTAGAACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTC 117264 |||||| |||||||||| ||||||||||| ||||| || ||| || ||| Sbjct 905051 GTAGAAGAAAGGCTCCACCGAGAGACCGTCGTCGTCCTTGTACTCGACCACAAAATCGTC 904992 Query 117265 ACTCGGATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCT 117324 ||| | ||| ||| | || | | || || ||||| ||||| || || Sbjct 904991 GGCCGGGTGGAAGATGGCCCGGGAGACCTGCATGAGCCGGGTGAAGATGTAGCG---GCC 904935 Query 117325 TGCAGC---ATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCA--CTCG-GCTCCAA 117378 || || ||||||||||| |||||||||||||| || ||| || | || | | Sbjct 904934 CGCGGCGTGGTCCTTGCCACCGTGCAGACGCGTACCGAACTGGCCATCCTTGCGCAGC-A 904876 Query 117379 GAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAG 117438 | || | ||||||| ||||||||||| || |||| ||| ||||| || Sbjct 904875 GCGG--GACGTTGTTGCTGCCCACAAAGTCCTGCGCCATTCCGACGATCGTCTGCACAAG 904818 Query 117439 GCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCAC 117498 | ||| |||||||| || || | ||||||| |||||||| || ||||| |||| Sbjct 904817 CGACTGCTCGCCATGGTGGTATGCGGAGTGCTCCGAGACGTAGCCGGCAAGCTGCACCAC 904758 Query 117499 CTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGG 117558 ||| ||| | || ||| ||||| ||||| | | | ||||||||| | || Sbjct 904757 CTTGATGGAGTTCACCAAGTTGCGCTTGAAGCAGGAGAACAGGATCTTGCGCTGGCCGGG 904698 Query 117559 CTT 117561 ||| Sbjct 904697 CTT 904695 Score = 93.3 bits (102), Expect = 5e-14 Identities = 291/441 (66%), Gaps = 16/441 (4%) Strand=Plus/Minus Query 151869 GCTGAATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGC 151928 |||||| ||||| ||||||||| | ||||| ||||| | |||||| | | || Sbjct 905111 GCTGAACCCGGTGCCGATGCCCGTCGTGCCGTTCACCAGCACCATCGGGATGACCGGAAT 905052 Query 151929 GTAAAACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTC 151988 ||| || ||||||||| ||||||| || | ||| | | || ||| ||| Sbjct 905051 GTAGAAGAAAGGCTCCACCGAGAGACCGTCGTCGTCCTTGTACTCGACCACAAAATCGTC 904992 Query 151989 AGCCGGATCGAATAT--CCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAG 152046 ||||| | ||| || || ||| | | | | | || ||||||||||| ||| Sbjct 904991 GGCCGGGTGGAAGATGGCCCGGGAGACCT--GCATGAGCCGGGTGAAGATGTAGCGGCCC 904934 Query 152047 CTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCA-GAGGGCTCGAGGAG 152105 ||| ||||||||||| ||| ||||| || ||||| ||| || | || || Sbjct 904933 GCGGCGTGGTCCTTGCCACCGTGCAGACGCGTACCGAACTGGCCATCCTTGCGC-AGCAG 904875 Query 152106 GTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC--ACAATCGTGCCCTGCAGA 152163 || ||||||| |||||| || | ||| ||| |||| || ||||| ||||| | Sbjct 904874 CGGGACGTTGTTGCTGCCCACAAAGTCCTGCGCC--ATTCCGACGATCGT---CTGCACA 904820 Query 152164 CTCG-CT--TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCC 152220 || || || || ||||| || || | ||||||| || ||| || || | |||| || Sbjct 904819 AGCGACTGCTCGCCATGGTGGTATGCGGAGTGCTCCGAGACGTAGCCGGCAAGCTGCACC 904760 Query 152221 ACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGAT 152280 ||||| ||| || || ||| ||||| |||| | | | | |||||||||| Sbjct 904759 ACCTTGATGGAGTTCACCAAGTTGCGCTTGAAGCAGGAGAACAGGATCTTGCGCTGGCCG 904700 Query 152281 GGTTTCAAACCGTCCACCACG 152301 || || || ||||| | |||| Sbjct 904699 GGCTTGAAGCCGTCAATCACG 904679 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 153843 GAAAACGTTAGCCAACTTGGCACCGTAACCATTGCGACCGCCCGTCACGCGTTG-TTCCT 153901 ||| ||||| | || ||| || ||| | || ||||| ||||||||||| | ||| |||| Sbjct 903074 GAATACGTTCGTCAGCTTCGCGCCGAAGCCGTTGCGCCCGCCCGTCAC-CTTTGCCTCCT 903016 Query 153902 CGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGTTCAGGGATCCAGA 153958 | |||| ||||||||| ||| | ||||||||| ||||| | ||| || | ||||| Sbjct 903015 CATCGTCATAGTTGGAGGAGGTAAGAAGGTGCCCGAAGATCATTTCCGGCACCCAGA 902959 >seq15 Length=618357 Score = 104 bits (114), Expect = 3e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 ||| |||| ||||||| ||||||| |||| ||| ||||| |||| ||||| || || Sbjct 523742 GGCACGAGCAGGTTGATGTTGTTGCCGCCGGTGAAGTTCTGCGCCATCTTCACGATGGTC 523801 Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214 ||||||| || || ||||||||| |||||| | ||| | |||||| |||| || | Sbjct 523802 TCCTGCAGCGAGGCCTCGCCGTGGTGAAACGCCGACGCCTCTGAGATGTAGCCCGACAGC 523861 Query 152215 TGCGCCACCTTC 152226 |||||||||||| Sbjct 523862 TGCGCCACCTTC 523873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215753752800