Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq28 194 2e-44 seq36 145 9e-30 seq9 143 3e-29 seq31 141 1e-28 seq22 109 6e-19 seq15 104 3e-17 >seq28 Length=1171705 Score = 194 bits (214), Expect = 2e-44 Identities = 796/1233 (65%), Gaps = 34/1233 (3%) Strand=Plus/Minus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 |||||||||| ||||| |||||||| ||||| |||| ||| ||||||||||| Sbjct 331728 CCACATGTCGAACTGCAGAATGCCCTCGCTGGCCGGGCTGCCCGTGAAGGTCTCGTACGG 331669 Query 80601 GCCCTCCGTCTTGGCCAGCTCAC---ACGACTCCATAAGGGCCGCGTGATAAATGCACTC 80657 ||| ||| ||| |||||||| ||||||| | | || || || || || Sbjct 331668 GCCATCCTCCTTCGCCAGCTCCATCGACGACTCGACA---GCAGCAAAGTAGATCGTTTC 331612 Query 80658 AAAGACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCA 80716 |||| | |||||| |||| |||||| | | | |||| || | ||| | | Sbjct 331611 GAAGATCTCTGCGTTCAC-CCGCTGCGCCTCCGCCGAGACAAACGGCAGTCGCATGAGGA 331553 Query 80717 TGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATC 80776 |||| |||| || || ||||| ||||||| | |||| ||||||| |||| |||| | Sbjct 331552 TGAAGGCGTCCGCGAGCCCCTGCACGCCGAGGCCGATGGGGCGGTTGCGCATGTTACTGC 331493 Query 80777 G-CTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA 80835 | | || | || || ||||| |||| || || || ||||| ||||| ||||| Sbjct 331492 GGCGCGCCGTCTCGACC-GGGTAGTAGTTGCGGTCAATAACCCGGTTTAGGTTACGTGTG 331434 Query 80836 ACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATT---GGTTCCC--CTTC-ACA 80889 | | ||| || | || ||| || ||| | | ||| | | || || Sbjct 331433 ATCTGCTTTGTCACGGTGTAGAGAAGCTGGTGGTTGAACTCACGCTTCTCAACGTCGACG 331374 Query 80890 AATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAAC 80949 || ||| || | ||| || || |||||||| ||| ||| | | || || Sbjct 331373 AAGCGCGGCAGCGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGTGGCGACGTGTAC 331314 Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 ||||| || |||||||| | || || |||| || || || || || |||||||| ||| Sbjct 331313 TCGACAATCTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGAC 331254 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 ||| |||||| |||||||||||| | | |||| || ||||||| ||| |||| Sbjct 331253 TTGCTGTTGCATGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCC 331194 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129 ||||| || ||| | ||| | |||| || | |||| | ||| |||| | | Sbjct 331193 AGGATAGCAAACCACACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCG 331134 Query 81130 TACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTC 81188 || |||| ||| | || |||| |||| | || |||| | |||||| Sbjct 331133 TAGCGCTCGTAGAGCCGC-TCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGT 331075 Query 81189 GTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGG 81248 ||| || |||||| ||| | ||| | | ||| |||| || || || Sbjct 331074 GTTGGGATCCATCAGCGTCCACTTCCCCTCGCTTTTCACACGTCTCATAAACAGATCTGG 331015 Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCG 81308 |||||| || ||| ||| ||||||||| |||| || || | ||| |||| | Sbjct 331014 GATCCACAGCGCGTAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTT 330955 Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC 81368 || | |||||| | | || ||| || ||||| ||||| ||||| ||||||| | || Sbjct 330954 CAGCAGCAGAAAGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCC 330895 Query 81369 CTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACAT 81425 |||||| || ||| ||||||| ||||| ||||| || ||| || || || | ||| Sbjct 330894 CTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCAT 330835 Query 81426 AGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCAC 81485 || | || || | ||| ||||||||||| | || ||| ||||| | Sbjct 330834 TGGCACGAGCCCGTTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGAT 330775 Query 81486 CTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTG-AAATCTGAGCACACCGGTTCA 81544 ||| | ||||| ||||| || | || ||||| ||| |||||| |||| Sbjct 330774 GTTGTGCACGTGCAGACCAATGCCGCC-GGCCGCTTTGCTGATCACGGCACACTCCTTCA 330716 Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTC-ATGTCA--AGCAAGAAACAGCTTG 81601 || || || || || |||||||| |||| ||| | | || || ||| | |||| Sbjct 330715 GCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCT-- 330658 Query 81602 ACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661 ||| || || | | |||||| || || || || ||||| ||||| |||| | | Sbjct 330657 -CATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGC 330599 Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGAC--GCGTGGAATATCGTCACCGTGAATACC 81719 || ||||| ||||| || || || || | || | ||| | |||||||| || Sbjct 330598 CCTTGGACATAAGGTCGTACGTCTCACGCACATTCTTG--AGATCTGCGCCGTGAATGCC 330541 Query 81720 GATAGCTACACGCATAAACATGTACTG-GGGCG 81751 | ||| |||||||| ||||| | ||| ||||| Sbjct 330540 AAGAGCGACACGCATGAACATCTGCTGTGGGCG 330508 Score = 131 bits (144), Expect = 2e-25 Identities = 291/431 (68%), Gaps = 12/431 (3%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 |||||| ||||||| ||||||||| | | | | ||||| ||||| ||| || | Sbjct 904686 GACGGCTTCAAGCCCGGCCAGCGCAAGATCCTGTTCTCCTGCTTCAAGCGCAACTTGGTG 904745 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103 | ||| ||||||| |||||| | |||||||| | ||||| | || || ||||| Sbjct 904746 AACTCCATCAAGGTGGTGCAGCTTGCCGGCTACGTCTCGGAGCACTCCGCATACCACCAT 904805 Query 32104 GGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAAT 32163 |||||| |||||| | || || ||| | || ||| ||||||| || || Sbjct 904806 GGCGAGCAGTCGCTTGTGCAGACGATCGTCGGAATGGCGCAGGACTTTGTGGGCAGCAAC 904865 Query 32164 AACCTGAACTTACTCGAGCCATC-TGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222 ||| | | || | || | ||| ||||| || || || || |||||||||||| Sbjct 904866 AACGTCCCGCTGCT-GCGCAAGGATGGCCAGTTCGGTACGCGTCTGCACGGTGGCAAGGA 904924 Query 32223 T---GCTGCGAGCTCCCGTTACATCTTCACCCGTCTC--GCACCTTCGACGCGCAAGATT 32277 || ||| || || |||||||||||||| ||| ||| | || || || Sbjct 904925 CCACGCCGCGGGC---CGCTACATCTTCACCCGGCTCATGCAGGTCTCCCGGGC--CATC 904979 Query 32278 TTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAG 32337 ||| ||||| | |||||| ||| || ||||||| || ||||||| ||| ||| Sbjct 904980 TTCCACCCGGCCGACGATTTTGTGGTCGAGTACAAGGACGACGACGGTCTCTCGGTGGAG 905039 Query 32338 CCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGA 32397 || | ||||||| |||||| | |||||| | |||||||||| | |||||||| Sbjct 905040 CCTTTCTTCTACATTCCGGTCATCCCGATGGTGCTGGTGAACGGCACGACGGGCATCGGC 905099 Query 32398 ACGGGGTTCAG 32408 || |||||||| Sbjct 905100 ACCGGGTTCAG 905110 >seq36 Length=2713245 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 1386071 AATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAG 1386012 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || ||||||| || || |||||||||||||| || || || ||||| Sbjct 1386011 CGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1385952 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || || || || ||||| || ||||| | || || || | ||||| || Sbjct 1385951 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACRCTCTCGGACTACAA 1385892 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || ||||| || Sbjct 1385891 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 1385844 >seq9 Length=588727 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 369775 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 369716 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 369715 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 369656 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || | ||||| || Sbjct 369655 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAAC 369596 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || ||||| || Sbjct 369595 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 369549 >seq31 Length=1531288 Score = 141 bits (156), Expect = 1e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 938318 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 938259 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 938258 GACACGATCGAGAACGTGAAGGCSAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 938199 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || | ||||| || Sbjct 938198 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAAC 938139 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || || || |||| || ||||| || Sbjct 938138 ATCCAGAARGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 938092 Score = 141 bits (156), Expect = 1e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 938807 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 938748 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 938747 GACACGATCGAGAACGTGAAGGCSAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 938688 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || | ||||| || Sbjct 938687 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAAC 938628 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || || || |||| || ||||| || Sbjct 938627 ATCCAGAARGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 938581 >seq22 Length=704707 Score = 109 bits (120), Expect = 6e-19 Identities = 328/504 (65%), Gaps = 2/504 (0%) Strand=Plus/Minus Query 64352 TCTGGACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACT 64411 |||||||||| |||||| | || || | ||| || | | ||||||| || || ||| Sbjct 499831 TCTGGACGGTGGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGCAAYGCTGAACG 499772 Query 64412 CACAGGAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTG 64471 ||| | ||||||||||||| || || || |||||||| || ||||| || | Sbjct 499771 ACGGGGAGCGGCACTTCATCAAGCACGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAG 499712 Query 64472 TGTTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCAT 64531 | | |||||| | | | || | | || || || | ||||||||||| | | Sbjct 499711 TCATCGAGAATCTTGCGCAGCGCTTCATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGT 499652 Query 64532 TCTATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTG 64591 |||| | || ||| | | || | || || |||||||| || | || | | Sbjct 499651 TCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCTGTGCTGCTGG 499592 Query 64592 ACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTAC 64651 ||| || | ||| | |||||| ||||||| || ||| |||| | | Sbjct 499591 ACACGTACATCACGGACAGCGAGGAGAAGCTGCGACTGTTGCACGCAATACAGACGAT-C 499533 Query 64652 CCGCTGTTACTAAA-AAGGCTGAATGGGCCATCCGGTGGATGAATCGTGGGTCGTCGTTT 64710 ||| | | ||| ||||| || ||||| | |||||||| | | || ||| Sbjct 499532 CCGTGCATCCAAAAGAAGGCGGAGTGGGCTGTGCGGTGGATCGGGAGCAGCGCGAGCTTT 499473 Query 64711 GGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGT 64770 |||| || | |||||| ||||| || ||||||||||| ||||| ||||| Sbjct 499472 CAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAGGGCATTTTCTTTTCCGGGTCGTTCTGC 499413 Query 64771 TCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTG 64830 | | |||||||| || ||||| || |||||||| || ||| |||| |||||||| Sbjct 499412 GCGCTGTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGGCTGACGTTCAGCAACGAGCTC 499353 Query 64831 ATCTCTCGGGACGAGGGGCTCCAC 64854 ||||| || |||||||| || ||| Sbjct 499352 ATCTCGCGCGACGAGGGCCTACAC 499329 >seq15 Length=618357 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 32052 GAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGC 32111 ||||||||||||||||||||||||| | ||||| |||| | ||||||||||||||| Sbjct 523873 GAAGGTGGCGCAGCTGTCGGGCTACATCTCAGAGGCGTCGGCGTTTCACCACGGCGAGGC 523814 Query 32112 GTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAA 32171 ||||| |||| ||||| || || | || |||||||| ||| | || ||| | || Sbjct 523813 CTCGCTGCAGGAGACCATCGTGAAGATGGCGCAGAACTTCACCGGCGGCAACAACATCAA 523754 Query 32172 CTTACTCGAGCCATCTGGACAGTTTGG 32198 | | |||| |||| || ||||| || Sbjct 523753 CCTGCTCGTGCCAGAGGGTCAGTTCGG 523727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310143360320