Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq9 107 1e-18 seq36 105 4e-18 seq31 105 4e-18 >seq9 Length=588727 Score = 107 bits (118), Expect = 1e-18 Identities = 168/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | || |||| ||||| || || ||| |||||| || ||||| || || | Sbjct 369547 CGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCG 369606 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || || | || || || || || ||||| || || | ||||| |||||||||| Sbjct 369607 AGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCG 369666 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTC 34655 | | ||||||||||| |||| || | || ||| | || ||||| ||| ||| Sbjct 369667 GGATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCG-GCTC 369724 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||| |||| | ||||| || ||||| | ||| ||||| || ||||||||| || Sbjct 369725 CACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTG 369779 >seq36 Length=2713245 Score = 105 bits (116), Expect = 4e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || |||| ||||| || || ||| |||||| || ||||| || || || Sbjct 1385843 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 1385902 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || || ||||| || || | ||||| ||||||||||| Sbjct 1385903 GAGYGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGG 1385962 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||||||||| |||| || | || ||| | || ||||| ||| |||| Sbjct 1385963 GATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCG-GCTCC 1386020 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| | ||||| || ||||| | ||| ||||| || |||||||| Sbjct 1386021 ACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1386070 >seq31 Length=1531288 Score = 105 bits (116), Expect = 4e-18 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | || |||| ||||| || || ||| ||| || || ||||| || || | Sbjct 938090 CGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCYTTCTGGATGTTGTAGTCCG 938149 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || || | || || || || || ||||| || || | ||||| |||||||||| Sbjct 938150 AGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCG 938209 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTC 34655 | | ||||||||||| |||| || | || ||| | || ||||| ||| ||| Sbjct 938210 GGATGCCCTCCTTGTCCTGGATC-TTSGCCTTCACGTTCTCGATCGTGTCGCTCG-GCTC 938267 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||| |||| | ||||| || ||||| | ||| ||||| || ||||||||| || Sbjct 938268 CACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTG 938322 Score = 105 bits (116), Expect = 4e-18 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | || |||| ||||| || || ||| ||| || || ||||| || || | Sbjct 938579 CGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCYTTCTGGATGTTGTAGTCCG 938638 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || || | || || || || || ||||| || || | ||||| |||||||||| Sbjct 938639 AGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCG 938698 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTC 34655 | | ||||||||||| |||| || | || ||| | || ||||| ||| ||| Sbjct 938699 GGATGCCCTCCTTGTCCTGGATC-TTSGCCTTCACGTTCTCGATCGTGTCGCTCG-GCTC 938756 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||| |||| | ||||| || ||||| | ||| ||||| || ||||||||| || Sbjct 938757 CACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTG 938811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729461912388