Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq9 109 5e-19 seq36 105 6e-18 seq31 105 6e-18 >seq9 Length=588727 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 26983 ACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAAC 27042 || |||||||||| || || || || |||||||||||| | || | || || ||||| | Sbjct 369780 ACACCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGC 369721 Query 27043 CGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102 || |||| |||| |||| || || || || || ||||| || ||||| || || | Sbjct 369720 CGAGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGG 369661 Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162 | || ||||| | || | ||||||||| || |||| || | || | || || | Sbjct 369660 ACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACT 369601 Query 27163 ACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||||| || |||||||| || | || |||| |||| |||| || ||| Sbjct 369600 ACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 369548 >seq36 Length=2713245 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || | || || ||||| ||| | Sbjct 1386070 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGAGC 1386011 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || || || || ||||| || ||||| || || || || Sbjct 1386010 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1385951 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| || | || | || || |||||| Sbjct 1385950 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACRCTCTCGGACTACAAC 1385891 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| || | || |||| |||| |||| || ||| Sbjct 1385890 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 1385843 >seq31 Length=1531288 Score = 105 bits (116), Expect = 6e-18 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || || |||||||||||| | || | || || ||||| ||| Sbjct 938320 CCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGA 938261 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| |||| |||| || || || || || ||||| || ||||| || || || | Sbjct 938260 GCGACACGATCGAGAACGTGAAGGCSAAGATCCAGGACAAGGAGGGCATCCCGCCGGACC 938201 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||||||||| || |||| || | || | || || |||| Sbjct 938200 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACA 938141 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||| || || ||||| || | || |||| |||| |||| || ||| Sbjct 938140 ACATCCAGAARGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 938091 Score = 105 bits (116), Expect = 6e-18 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || || |||||||||||| | || | || || ||||| ||| Sbjct 938809 CCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGCCGA 938750 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| |||| |||| || || || || || ||||| || ||||| || || || | Sbjct 938749 GCGACACGATCGAGAACGTGAAGGCSAAGATCCAGGACAAGGAGGGCATCCCGCCGGACC 938690 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||||||||| || |||| || | || | || || |||| Sbjct 938689 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACA 938630 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||| || || ||||| || | || |||| |||| |||| || ||| Sbjct 938629 ACATCCAGAARGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 938580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918204286720