Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6 183 3e-41 >seq6 Length=529559 Score = 183 bits (202), Expect = 3e-41 Identities = 475/717 (66%), Gaps = 13/717 (2%) Strand=Plus/Plus Query 34091 CATGGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGGAAG 34150 |||| |||| ||||||| || | | | | | || ||| | | | ||| | |||| Sbjct 383532 CATGAGGAGCGGCAGTACCTTGAGCTGATTGACCGCATCATGAAGACGGGGATCGTGAAG 383591 Query 34151 GGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTT 34210 | |||||| ||||| ||| ||| || | | |||||| ||||| || | | ||| Sbjct 383592 GAGGACCGCACCGGCGTGGGCACCATCAGCCTCTTCGGCGCACAGATGCGCTTCTCCCTA 383651 Query 34211 CGGGGCGAAT---TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 || | | | | ||||||||||||||||| ||||| | |||| |||||| |||| Sbjct 383652 CGCGACAACCGCCTGCCGCTGCTGACGACGAAGCGTGTCTTCTGGCGCGGCGTGTGCGAG 383711 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 ||||||||||||||| || | |||| |||||| | || ||| || | || | Sbjct 383712 GAGCTGCTGTGGTTCCTGCGCGGGGAGACGAACGCGCAGCTGCTGGCGGACAAGGACATT 383771 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 | |||||||||| |||| || || || ||||| |||| || || || || Sbjct 383772 CACATCTGGGACGGCAACGGCTCGCGCGAGTTTCTCGACAGCCGCGGCTTGACAGAGAAT 383831 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 ||||| ||| | ||||| |||||||| ||||||||| | ||||| ||||| || || Sbjct 383832 AAGGAGATGGACCTCGGCCCTGTCTACGGCTTCCAGTGGCGCCACTTCGGGGCAGATTAC 383891 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGAC 34507 |||| |||||| |||| || | || | ||||||| | || | | | || Sbjct 383892 AAGGGGTTTGAAGCGAACTACGACGGCGAAGGGGTGGACCAGATCAGGTCCATCGTGGAG 383951 Query 34508 ACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGAT 34567 || | ||| |||||| | ||| | | | | | || ||||||||| | Sbjct 383952 ACGATCAAGGCGAACCCGAACGACCGCCGCCTTCTATTCACTGCCTGGAACCCGTGCGCG 384011 Query 34568 CTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT---CGCG-- 34621 || | ||||||||| || ||||||||| || ||| ||||||||||| | || Sbjct 384012 CTGCAAAAGATGGCGCTGCCGCCGTGCCACTTGCT-TGCTCAATTCTACGTGAACACGGA 384070 Query 34622 -AATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCC 34680 | | ||||| |||||| ||| || || || ||| | |||||||| | || || || Sbjct 384071 CACGAGCGAGCTATCCTGCATGCTGTACCAGCGCTCGTGCGACATGGGTCTCGGCGTCCC 384130 Query 34681 GTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCG-TGGGGTTGG 34739 |||||||| || ||||| |||||||| | | || || || | || ||| || Sbjct 384131 TTTCAACATCGCCTCCTACGCGCTGCTCACCATCCTCATTGC-CAAGGCGACGGGCCTGC 384189 Query 34740 TTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCG 34796 || || ||||| ||||| || | || || || || |||||| |||||| ||| Sbjct 384190 GGCCCGGTGAGCTTGTGCACACCCTTGGTGACGCCCACGTCTACCGCAACCACGTCG 384246 Score = 183 bits (202), Expect = 3e-41 Identities = 475/717 (66%), Gaps = 13/717 (2%) Strand=Plus/Minus Query 6549 CGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA 6608 ||| |||||| |||||| || || || || | || ||||| ||||| || || || Sbjct 384246 CGACGTGGTTGCGGTAGACGTGGGCGTCACCAAGGGTGTGCACAAGCTCACCGGGCCGCA 384187 Query 6609 ACCCCA-CGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGC 6667 ||| || | || || || | | |||||||| ||||| || |||||||| || Sbjct 384186 GGCCCGTCGCCTTG-GCAATGAGGATGGTGAGCAGCGCGTAGGAGGCGATGTTGAAAGGG 384128 Query 6668 ACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATT---C 6724 || || | |||||||| | ||| || || || ||| |||||| ||||| | | | Sbjct 384127 ACGCCGAGACCCATGTCGCACGAGCGCTGGTACAGCATGCAGGATAGCTCGCTCGTGTCC 384068 Query 6725 GCG---ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 | | ||||||||||| ||| || ||||||||| || ||||||||| | || | Sbjct 384067 GTGTTCACGTAGAATTGAGCA-AGCAAGTGGCACGGCGGCAGCGCCATCTTTTGCAGCGC 384009 Query 6781 CTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTC 6840 ||||||||| || | | | | | ||| | |||||| ||| | || || Sbjct 384008 GCACGGGTTCCAGGCAGTGAATAGAAGGCGGCGGTCGTTCGGGTTCGCCTTGATCGTCTC 383949 Query 6841 GATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATA 6900 | | | || | ||||||| | || | || |||| |||||| |||| || Sbjct 383948 CACGATGGACCTGATCTGGTCCACCCCTTCGCCGTCGTAGTTCGCTTCAAACCCCTTGTA 383889 Query 6901 CTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCG 6960 || ||||| ||||| | ||||||||| |||||||| ||||| | ||| ||||| Sbjct 383888 ATCTGCCCCGAAGTGGCGCCACTGGAAGCCGTAGACAGGGCCGAGGTCCATCTCCTTATT 383829 Query 6961 AGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC 7020 || || || || |||| ||||| || || || |||| |||||||||| | | Sbjct 383828 CTCTGTCAAGCCGCGGCTGTCGAGAAACTCGCGCGAGCCGTTGCCGTCCCAGATGTGAAT 383769 Query 7021 CCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTC 7080 || | || ||| || | |||||| |||| | || |||||||||||||||||| Sbjct 383768 GTCCTTGTCCGCCAGCAGCTGCGCGTTCGTCTCCCCGCGCAGGAACCACAGCAGCTCCTC 383709 Query 7081 GACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA---ATTCGCCCCGAAG 7137 | |||||| |||| | ||||| ||||||||||||||||| | | | | || || Sbjct 383708 GCACACGCCGCGCCAGAAGACACGCTTCGTCGTCAGCAGCGGCAGGCGGTTGTCGCGTAG 383649 Query 7138 GTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTT 7197 | | | || ||||| |||||| | | || ||| ||| ||||| |||||| |||| Sbjct 383648 GGAGAAGCGCATCTGTGCGCCGAAGAGGCTGATGGTGCCCACGCCGGTGCGGTCCTCCTT 383589 Query 7198 CCGGTAGCCCTCCCTGAGGATCCGCGCCACCTGATACAGATACTGCCACTCCCCATG 7254 | | ||| | | | ||| || | | | | | || ||||||| |||| |||| Sbjct 383588 CACGATCCCCGTCTTCATGATGCGGTCAATCAGCTCAAGGTACTGCCGCTCCTCATG 383532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262198281920