Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq6 131 1e-25 seq31 98.7 7e-16 >seq6 Length=529559 Score = 131 bits (144), Expect = 1e-25 Identities = 401/611 (66%), Gaps = 22/611 (4%) Strand=Plus/Minus Query 27126 CTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGT 27185 ||||||||| | ||| || | | ||||| | |||||||||| ||||| || ||||| Sbjct 384269 CTCGAGCTGCGACTTGAGGGCACCGACGTGGTTGCGGTAGACGTGGGCGTCACCAAGGGT 384210 Query 27186 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 27245 ||| |||| ||| || || || || || | | || || | | ||||| || | Sbjct 384209 GTGCACAAGCTCACCGGGCCGCAGGCCCGTCGCCTTGGCAATGAGGATGGTGAGCAGCGC 384150 Query 27246 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 27305 |||| ||||||||| || || || ||||| |||||||| | ||| | |||||| ||| Sbjct 384149 GTAGGAGGCGATGTTGAAAGGGACGCCGAGACCCATGTCGCACGAGCGCTGGTACAGCAT 384090 Query 27306 ACACGAGAGCTC-------TCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAG 27358 || || ||||| ||| | | | ||||| || ||| | ||||||||| | Sbjct 384089 GCAGGATAGCTCGCTCGTGTCCGT-GTTCACGTAGAATTGAGCAAGCAAGTGGCACGGCG 384031 Query 27359 GAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTT 27418 | || ||||| || | ||||||||||| | | | ||| | ||| | Sbjct 384030 GCAGCGCCATCTTTTGCAGCGCGCACGGGTTCCAGGCAGTGAATAGAAGGCGGCGGTCGT 383971 Query 27419 CTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA-G 27477 ||||| | |||| |||||| | | ||| |||||||| || ||| | Sbjct 383970 TCGGGTTCGCCTTGATCGTCTCCACGATGGACCTGATCTGGTCCACCCCT-TCGCCGTCG 383912 Query 27478 TAGTCTACCCTCATGTCCGT-GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACAC 27536 |||| | | ||| || | ||| ||||| ||||| || | ||| ||||| ||||| || Sbjct 383911 TAGT-TCGCTTCAAACCCCTTGTAATCTGCCCCGAAGTGGCGCCACTGGAAGCCGTAGAC 383853 Query 27537 CGGTCCCAGGTC----TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTC 27592 || || ||||| ||| | ||| |||| ||||| | |||| | ||| || | Sbjct 383852 AGGGCCGAGGTCCATCTCCTTATTCTCTGTC----AAGCCGCGGCTGTCGAGAAACTCGC 383797 Query 27593 TGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGG 27652 || |||||| |||||||||| | | |||| || | ||| | | ||| || Sbjct 383796 GCGAGCCGTTGCCGTCCCAGATGTGAATGTCCTTGTCCGCCAGCAGCTGCGCGTTCGTCT 383737 Query 27653 ACCCTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTC 27711 ||| | | |||||||||||||||||| ||| ||| | ||| ||||| | ||| ||| Sbjct 383736 CCCCGCGCAGGAACCACAGCAGCTCCTCGCAC-ACGCCGCGCCAGAAGACACGCTTCGTC 383678 Query 27712 GTGAGGAGGGG 27722 || || || || Sbjct 383677 GTCAGCAGCGG 383667 >seq31 Length=1531288 Score = 98.7 bits (108), Expect = 7e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 48606 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 48665 ||||||||||||||||||| || ||||| | ||||| |||||||||||||||||||| Sbjct 40266 CCAGGAGGACATGCCCTTCAACCGCGACGGCATCGTGCCGGACCTCATCATCAACCCCCA 40207 Query 48666 CGCCTTTCCCTCCAGGATGACCGT 48689 |||| |||||||| | ||||| || Sbjct 40206 CGCCATTCCCTCCCGCATGACGGT 40183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507037878716