Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F000470725.1_202013-09-30] 36 sequences; 32,414,853 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq9 159 2e-34 seq36 154 1e-32 seq31 149 5e-31 >seq9 Length=588727 Score = 159 bits (176), Expect = 2e-34 Identities = 178/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| |||||| |||||| ||||||||||| || | | Sbjct 369549 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 369608 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| ||||| ||||||| |||||||| || | || Sbjct 369609 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 369668 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| |||||| |||| | |||| | || |||||| | ||||| Sbjct 369669 ATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTCGGCTCCAC 369727 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGA 44344 ||||| || |||||||| || || || |||||||||||||| |||||| ||||| Sbjct 369728 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTGTGA 369782 >seq36 Length=2713245 Score = 154 bits (170), Expect = 1e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| |||||| |||||| ||||||||||| || | | Sbjct 1385844 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 1385903 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| ||||| ||||||| |||||||| || | || Sbjct 1385904 AGYGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1385963 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| |||||| |||| | |||| | || |||||| | ||||| Sbjct 1385964 ATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTCGGCTCCAC 1386022 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || |||||||| || || || |||||||||||||| ||||| Sbjct 1386023 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1386070 >seq31 Length=1531288 Score = 149 bits (164), Expect = 5e-31 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| |||||| ||| || ||||||||||| || | | Sbjct 938092 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCYTTCTGGATGTTGTAGTCCGAG 938151 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| ||||| ||||||| |||||||| || | || Sbjct 938152 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 938211 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| |||| | |||| | || |||||| | ||||| Sbjct 938212 ATGCCCTCCTTGTCCTGGATCTTSGCCTTC-ACGTTCTCGATCGTGTCGCTCGGCTCCAC 938270 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||| || |||||||| || || || |||||||||||||| |||||| || Sbjct 938271 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTG 938322 Score = 149 bits (164), Expect = 5e-31 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| |||||| ||| || ||||||||||| || | | Sbjct 938581 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCYTTCTGGATGTTGTAGTCCGAG 938640 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| ||||| ||||||| |||||||| || | || Sbjct 938641 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 938700 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| |||| | |||| | || |||||| | ||||| Sbjct 938701 ATGCCCTCCTTGTCCTGGATCTTSGCCTTC-ACGTTCTCGATCGTGTCGCTCGGCTCCAC 938759 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||| || |||||||| || || || |||||||||||||| |||||| || Sbjct 938760 CTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTG 938811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990242054212