Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq22 194 2e-44 seq36 93.3 4e-14 >seq22 Length=675415 Score = 194 bits (214), Expect = 2e-44 Identities = 229/305 (75%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || |||||||| | ||| | ||| | ||||| || || |||| ||| Sbjct 514844 GAGCCGCTGCAGCAGGAGAACCCGCTCCGCTACGTCCTCTTCCCAATCCAGTACCATGAC 514785 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| || |||||| | |||||| Sbjct 514784 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGACCTG 514725 Query 116696 TCCAAGGACACGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| |||| || ||||||| | ||| ||||||| ||||| || ||||||||||| Sbjct 514724 GGCAACGACATGAAGGACTGGGCAATGCT-GAACGACGGGGAGCGGCACTTCATCAAGCA 514666 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||| ||||| ||||||| |||||||||||| |||| ||||||||| | |||| || Sbjct 514665 CGTGCTTGCCTTCTTCGCCGGCAGCGACGGCATAGTCATCGAGAATCTTGCGCAGCGCTT 514606 Query 116815 CGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGG 116873 | | || || ||| ||||| | |||||||| |||||||| || ||| | |||| Sbjct 514605 C-ATGAGCGACGTGAAGGTGCCAGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGG 514547 Query 116874 AGAAC 116878 ||||| Sbjct 514546 AGAAC 514542 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGC-TTCCTCACCGAAG 117287 |||||| ||||||| || || ||||| |||||||| ||| ||| || ||| | Sbjct 513284 GCGCGTGCTGGAGATCATCGTGGATGCGGTGAACATCGAGC-GCGAGTTCATCTGCGACG 513226 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 ||||||||||||| ||| | || | || ||| | | |||| |||| |||||||||||| Sbjct 513225 CGCTGCCGGTGCGGCTGATTGGCATGAAC-GCGGAGCTGATGGCGCAGTACATCGAGTTC 513167 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||| ||| |||||||| | ||| | || | ||||||||| | || | | ||| Sbjct 513166 GTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCGCTCGACGCAGCCG 513107 Query 117407 CTGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | | ||||| Sbjct 513106 TTCGACTTCATGGAGATGATCTC 513084 >seq36 Length=2714535 Score = 93.3 bits (102), Expect = 4e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 40824 CGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGC 40883 ||| ||||| |||||||| || | ||||| ||| ||||||||||||||||||||| | Sbjct 1387651 CGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAACATCCAGAAGGAGTC 1387592 Query 40884 CACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| || ||| ||||| || | |||||| Sbjct 1387591 CACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 1387558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218968151360