Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq28 349 3e-91 >seq28 Length=1168530 Score = 349 bits (386), Expect = 3e-91 Identities = 557/792 (70%), Gaps = 8/792 (1%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| ||||| || ||||| || ||| ||| | | ||||||||||| ||||| || Sbjct 331300 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGTGGCGACGTGTACTCGACAATCTCC 331241 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || ||||| || ||||| |||||||| | ||| ||||||| || | ||||| Sbjct 331240 GTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCAT 331181 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | ||||||||||| | | ||||| |||||||||| ||| ||||| | ||| || | Sbjct 331180 GCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATAGCAAAC 331121 Query 23201 CACATAGTCTGAGCGTGAACACGTCGC-ACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 |||| ||| || || | |||| ||| | ||| || |||||| | ||| Sbjct 331120 CACACCTCCTGGGCCTGGAT-CGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTA 331062 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC-GGGCGATTGCATCGGACACA 23318 | | ||||| || |||| || || ||| || || |||| || | ||| || Sbjct 331061 GAGCCGCTCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTGT-TGGGATCCA 331003 Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 | || ||||| | || ||| || ||||||||||| ||||| || ||||| || | Sbjct 331002 TCAGCGTCCACTTCCCCTCGCTTTTCACACGTCTCATAAACAGATCTGGGATCCACAGCG 330943 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 ||||||| || |||||||||||| || ||||| || ||||| ||||| || || Sbjct 330942 CGTAGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAA 330883 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 || | || ||||| || ||||| |||||||| || ||||| || |||||| | |||| Sbjct 330882 AGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTAC 330823 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 ||||||||| || ||||| ||||| ||||||||| | || | |||||| |||||||| | Sbjct 330822 CGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCC 330763 Query 23559 CGTTGGACGCGCCG--CCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAAC 23616 |||| |||| |||| | || || || | || || || | |||||| || Sbjct 330762 CGTTCGACGTGCCGTTCGTA--CCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCAC 330705 Query 23617 GTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTA 23676 ||| | ||| ||||| ||| ||| ||| |||| || || | ||||| |||||||| Sbjct 330704 GTGCAGACCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCTTCAGCGTGTCGTA 330645 Query 23677 GATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTT 23736 |||||| ||||||||||| || || | ||| |||| ||| ||||| |||||||| || Sbjct 330644 GATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTT 330585 Query 23737 GGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAG 23796 || || |||| || || |||||| ||||||| || ||| | || || ||||| || Sbjct 330584 CGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGACATAAG 330525 Query 23797 ATTGTACGTGTC 23808 | |||||| || Sbjct 330524 GTCGTACGTCTC 330513 Score = 89.7 bits (98), Expect = 5e-13 Identities = 282/432 (65%), Gaps = 9/432 (2%) Strand=Plus/Minus Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGG 22512 |||||| || | ||||||||| || || ||||| ||| ||||| || ||||| || Sbjct 331874 GTTCACAACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTCGAGGTGAAGGG 331815 Query 22513 TTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAA 22572 ||||| | || || || || || ||||| | ||| || ||||| ||||| || || | Sbjct 331814 CTCGAAGCACTCGTTATTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAAC 331755 Query 22573 CAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCA 22632 ||| || ||||| | || ||| || | || |||||| | | ||||||||| Sbjct 331754 CAGCAGGGAGTTGCGCATGCCCACCTGCATCACCTTCTCCTTGAGGCTGGCCCAGTCCCA 331695 Query 22633 CAGATCGGAC---GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGC 22689 || || ||| | | || | |||||| ||| | |||| | ||| || || Sbjct 331694 GCGACCGCTGTTGGGCCGCGCGTTCTTCCACATGTCGAACTGCAGAATGCCCTCGCTGGC 331635 Query 22690 CGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGC-TCGCCT 22748 ||||||||| | | || |||||||| |||| | || || || || | || || Sbjct 331634 CGGGCTGCCCGTGAAGGTCTCGTACGGGCCATCCTCCTTCGCCAGCTC-CATCGACGACT 331576 Query 22749 CCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGC 22808 | | || | | || || || |||||||| | ||||| | || ||| | ||| Sbjct 331575 CGACAGCAGCAAAGTAGATCGTTTCGAAGATCTCTGCGTTCA--CCCGCTGCGCCTCCGC 331518 Query 22809 --TTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACC 22866 | |||||| ||||| | | ||| |||||||| | ||||| ||||| | || Sbjct 331517 CGAGACAAACGGCAGTCGCATGAGGATGAAGGCGTCCGCGAGCCCCTGCACGCCGAGGCC 331458 Query 22867 GATCGGTCGGTT 22878 ||| || ||||| Sbjct 331457 GATGGGGCGGTT 331446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766199405120