Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq28 289 3e-73 seq22 102 8e-17 >seq28 Length=1168530 Score = 289 bits (320), Expect = 3e-73 Identities = 950/1452 (65%), Gaps = 37/1452 (3%) Strand=Plus/Minus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || || || | ||||||||| || |||||| || | || | ||| || || Sbjct 331880 GTACTTGTTCACAACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTCGAGGT 331821 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 |||||| || || ||||||||||||| || || || | ||| | ||||| |||||| Sbjct 331820 GAAGGGCTCGAAGCACTCGTTATTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGG 331761 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 || |||| | || ||||||| ||| || | | | | ||||| || | |||| Sbjct 331760 GGCAACCAGCAGGGAGTTGCGCATGCCCACCTGCATCACCTTCTCCTTGAGGCTGGCCCA 331701 Query 145231 ATCCCATAG--CGAAGTCGG-CCTCACGTCC---CACATGTCGTACTGCAAAATGCCCTC 145284 ||||| | || || || || | ||| | ||||||||| |||||| ||||||||| Sbjct 331700 GTCCCAGCGACCGCTGTTGGGCCGCGCGTTCTTCCACATGTCGAACTGCAGAATGCCCTC 331641 Query 145285 GCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACT 145344 |||||| |||||||| |||| ||| ||| || || ||||| || | Sbjct 331640 GCTGGCCGGGCTGCCCGTGAAGGTCTCGTACGGGCCATCCTCCTTCGCCAGCTC-CATCG 331582 Query 145345 -CGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTT 145403 || ||| | ||| | || || || || ||| || | ||| | | || ||| | Sbjct 331581 ACGACTCGACAGCAGCAAAGTAGATCGTTTCGAAGATCTCTGCGTTCACCCGCTGCGCCT 331522 Query 145404 CATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCA 145463 | | | |||||| |||| || | || || || ||||||||||| | || | Sbjct 331521 CCGCCGAGACAAACGGCAGTCGCATGAGGATGAAGGCGTCCGCGAGCCCCTGCACGCCGA 331462 Query 145464 CGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTAC 145523 ||||||||| || | |||||| || | ||||| ||||| || || || | Sbjct 331461 GGCCGATGGGGCGGTTGCGCATGTTACTGCGGCGCGCCGTCTCGACCGGGTAGTAGTTGC 331402 Query 145524 GGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAA---TGTGCCGCAACTTTT 145580 |||| |||| || | ||| || | |||||| | ||| | | || | Sbjct 331401 GGTCAATAACCCGGTTTAGGTTACGTGTGATCTGCTTTGTCACGGTGTAGAGAAGCTGGT 331342 Query 145581 CAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAAT 145640 || ||| | || |||||| | || ||| | ||||| || || | | Sbjct 331341 G---GTTGAACTCACGCTTCTCAACGTCGACGAAGCGCGGCAGCGCGATGGAGGCGAGGT 331285 Query 145641 TACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTA 145699 | || || |||||||||| |||| || |||| | || ||||| | ||| | || Sbjct 331284 TGCACACCGCCGTCTCCTGTGGCGACG-TGTACTCGACAATCTCCGTGCATAGGTTCGAG 331226 Query 145700 CATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGC 145759 || ||||| || || ||||| | ||| || || |||||||| |||||||||||||| Sbjct 331225 CACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGCGTCCTTGTAGAGG 331166 Query 145760 ATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGTCCTGCG 145817 | | |||| || || ||||| | ||| | ||||| |||| |||| || ||||| | Sbjct 331165 ACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATAGCAAACCA--CACCTCCTGGG 331108 Query 145818 CACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACG 145877 | | | | || | ||||||||| ||||| | ||||||| ||||||| Sbjct 331107 CCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAGCCGCTCAAACT 331048 Query 145878 CGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGC 145937 | ||| ||||||||| || || || ||| |||||||| |||||||| ||| | Sbjct 331047 CTTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTGGGATCCATCAGCGTCCACTTCC 330988 Query 145938 CGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC 145997 | | | || || || |||||||| |||||| | |||||||||||| | | ||||| Sbjct 330987 CCTCGCTTTTCACACGTCTCATAAACAGATCTGGGATCCACAGCGCGTAGAAGAGGTCGC 330928 Query 145998 --GCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTC 146055 |||| || || || ||| |||| || |||| || | | | ||| ||| Sbjct 330927 GGGCGCGCTG--GTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGCCAAAGACGTC 330870 Query 146056 CGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGTC 146112 |||||||| || || | ||||||||||| ||| || || || || ||| |||||||| Sbjct 330869 AGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTC 330810 Query 146113 CACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCC 146172 ||||| || | ||||||| |||||||| | ||| ||| ||| ||| | | ||| Sbjct 330809 CACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGCCCGTTCGACGTGCC 330750 Query 146173 GTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACC 146232 ||||||| ||| | |||| | ||| | | || || | || || | || Sbjct 330749 GTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTGCACGTGCAGACCAATGCC 330690 Query 146233 GCC-GCCGTACTTGGAT-ATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATG 146290 ||| |||| ||| | | || |||| || || ||||| |||||||||||||| ||| Sbjct 330689 GCCGGCCG--CTTTGCTGATCACGGCACACTCCTTCAGCGTGTCGTAGATGCCGTCGATG 330632 Query 146291 CTATC--GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCG 146348 || || ||||| | ||| | ||| |||||||||| ||| |||| | |||| || || | Sbjct 330631 CTGTCTTCCTTCG-ACGCC-ACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCCGG 330574 Query 146349 CCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTT 146408 | || | |||||| | ||||| || || | | ||| | ||||| | Sbjct 330573 CGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGGACATAAGGTCGTACGTCT 330514 Query 146409 C-GATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGT 146467 | | ||||| | || |||| |||||||| | |||||| ||||||| ||| || Sbjct 330513 CACGCACATTCTTG-AGATCTGCGCCGTGAATGCCAAGAGCGACACGCATGAACATCTGC 330455 Query 146468 TGGGGCCGCTCC 146479 || || |||||| Sbjct 330454 TGTGGGCGCTCC 330443 >seq22 Length=675415 Score = 102 bits (112), Expect = 8e-17 Identities = 217/316 (69%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 46283 AGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTG 46342 ||||||| || |||||||| || || || || ||| | | | | | ||||||| Sbjct 513351 AGGGCCTACACACGGACTTCGCATGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGC 513292 Query 46343 CGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTA 46402 ||| ||| ||||||| || || ||| |||||| ||| ||| ||||| | Sbjct 513291 CGCGCGAGCGCGTGCTGGAGATCATCGTGGATGCGGTGAACATCGAGCGCGAGTTCATCT 513232 Query 46403 CGGCCGCACTGCCCGCTGCC-CTGCTGGGCATGAACGCACAGTCAATGTGCG-ACTACAT 46460 | ||| ||||| | ||| ||| | ||||||||||| || ||| ||| | ||||| Sbjct 513231 GCGACGCGCTGCCGG-TGCGGCTGATTGGCATGAACGCGGAGCTGATG-GCGCAGTACAT 513174 Query 46461 CGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACGCG-C 46519 |||||| || |||||||| ||||| ||| ||| | || |||||| | | | || | Sbjct 513173 CGAGTTCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACTACCGCTCGAC 513114 Query 46520 GCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAA 46579 || | || || || || ||| | | ||||| ||| |||||||||| || || ||||| | Sbjct 513113 GC-AGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTCGAGA 513055 Query 46580 AGCGCGTCGGCGAGTA 46595 || || || ||||| Sbjct 513054 AGAAGGTGGGGGAGTA 513039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012587594240