Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq28 91.5 3e-13 seq22 86.0 1e-11 >seq28 Length=1168530 Score = 91.5 bits (100), Expect = 3e-13 Identities = 213/318 (67%), Gaps = 20/318 (6%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTC----TCGCGGTATGATGTGGAGCGTTCTAT 218573 ||||| | ||||||||||| ||||| ||| |||| | || ||||| || Sbjct 904462 GACTTTGTGGACAAGGAGCTGATTCTCTTCTCCATCGCCGACTG----CGAGCGCAGCAT 904517 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 || |||||| | || ||| ||||||| ||||| |||||||| || || ||||| Sbjct 904518 CCCGAGCGTGATTGACGGCTTCAAGCCCGGCCAGCGCAAGATCCTGTTCTCCTGCTTCAA 904577 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| ||| |||| | || ||||| | ||| || | || || || || || || Sbjct 904578 GCGCAACTTGGTGAACTCCATCAAGGTGGTGCAGCTTGCCGGCTACGTCTCGGAGCACTC 904637 Query 218694 TGGCTACCATCACGGTGAGCA---GAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750 | ||||| || || ||||| | | ||||| | || || || ||||| ||||| Sbjct 904638 CGCATACCACCATGGCGAGCAGTCGCTTGTGCAG---ACGATCGTCGGAATGGCGCAGGA 904694 Query 218751 CTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCA---ACGGTCAGTTTGGTTCTCG 218807 || ||||||||| |||||| | | |||||| | || | || ||||| ||| | || Sbjct 904695 CTTTGTGGGCAGCAACAACGT---CCCGCTGCTGCGCAAGGATGGCCAGTTCGGTACGCG 904751 Query 218808 TCTATTGGGTGGAAAGGA 218825 ||| ||||| ||||| Sbjct 904752 TCTGCACGGTGGCAAGGA 904769 >seq22 Length=675415 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||||||| ||| ||||| | ||||||||||||||| || | || Sbjct 513057 TCGAAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 513116 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||| ||||| | ||| || | || | | ||||| || || ||||| | Sbjct 513117 GAGCGGTAGTGCTTCTCCTCGCCGAGCGACACCAGCAGCCGGTCCGCGACGAACTCGATG 513176 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | |||||||||||||| || || | || || |||||| Sbjct 513177 TACTGCGCCATCAGCTCCGCGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATG 513236 Query 251743 AATTC 251747 || || Sbjct 513237 AACTC 513241 Score = 86.0 bits (94), Expect = 1e-11 Identities = 138/195 (71%), Gaps = 5/195 (3%) Strand=Plus/Plus Query 252211 GCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATG 252270 |||| ||||| || || ||||| |||||||| || |||||| |||| | | ||||||| Sbjct 514615 GCAAGATTCTCGATGACTATGCCGTCGCTGCCGGCGAAGAAGGCAAGCACGTGCTTGATG 514674 Query 252271 AAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGA 252330 ||||| ||||| ||||||| ||| | | |||||| ||||| | ||| Sbjct 514675 AAGTGCCGCTCCCCGTCGTTCAGCATTGC---CCAGTCCTTCATGTCGTTGCCCAGGTCG 514731 Query 252331 ACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCG-AACACATCAGG 252389 | || ||||||||||||| | | || || ||||||| ||||| | | ||| | Sbjct 514732 ATCTCCTCCACCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC-TTGCGCCAGATGTCATG 514790 Query 252390 GTACTTGATTGGGAA 252404 ||||| ||||||||| Sbjct 514791 GTACTGGATTGGGAA 514805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836325910276