Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq28 309 6e-79 >seq28 Length=1168530 Score = 309 bits (342), Expect = 6e-79 Identities = 1129/1730 (65%), Gaps = 73/1730 (4%) Strand=Plus/Minus Query 243735 CCACGCTGAACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTC 243793 ||||| |||||| || || || || || |||||||||| | ||||||||| | ||| ||| Sbjct 332217 CCACGGTGAACTTGATCGCGTCCGCCG-CGGCCTTGGTGCGCAGGTAGTAGACGCCAGTC 332159 Query 243794 TTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTT 243853 || |||||| |||| | || | |||||| ||| | || | ||| | Sbjct 332158 TTCAGTCCAGCTTCCCAGCAATAGAAGAGCATGGACGTGATCTGG-----CCGGAGGTGG 332104 Query 243854 GGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGC 243913 || || | | || |||||||| || ||||| |||||| | | | | | || Sbjct 332103 GGCTC----TGG---AGGAAGAGGTTCAGCGACTGCGACTGGTCAATGTACTGGCCGCGG 332051 Query 243914 TCTGCG-GCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972 || ||| |||||| || || | ||| | ||||| || | ||| ||| | Sbjct 332050 TC-GCGTGCCATGTCTATCAGCTTGCGCTGTGGAATCTCCCACACGGTCCGGTAAAGCTC 331992 Query 243973 CTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTG 244032 | | |||| || || | || | || | | | ||||| |||| | ||||| || Sbjct 331991 CCTCAGGTCGTCCGGCATGCCGTTAATAGTGAGGATAGAGCCGTTGTAGGAGATGATCTC 331932 Query 244033 GGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCG-CCTCGACCAGGTGCCTGT 244091 | | ||||| |||||||| || || | |||| | | || ||| |||| | ||| Sbjct 331931 GTTCCGCATCGACTCGTTCCATAGACC-ACGCGCAATAAGGTCCATGACGAGGTACTTGT 331873 Query 244092 TCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCT 244151 |||| || | ||||| || |||||| ||||| ||||| ||| | ||| |||| Sbjct 331872 TCACAACAGGGAACTCGCCGCTCAGCACACGGCGGACGTAGATGTTCGAGGTGAAGGGCT 331813 Query 244152 CGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCA 244211 ||| || ||| | ||||| || ||||||| ||| ||| || |||||||| | |||| Sbjct 331812 CGAAGCACTCGTTATTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGCAACCA 331753 Query 244212 GCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTC--TGAGCTCGTTCCAGTCCC 244268 |||| ||| | || ||| | ||| || | || |||| | |||||||| Sbjct 331752 GCAGGGAGTTGCGCATGCC---CACCTGCATCACCTTCTCCTTGAGGCTGGCCCAGTCCC 331696 Query 244269 ACATGCCCGAGA-GGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 | || | || || |||||| ||||||||| |||||||| | |||| | Sbjct 331695 AGCGACCGCTGTTGGGCCGCGCGTTCTT----CCACATGTCGAACTGCAGAATGCCCTCG 331640 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCT- 244386 ||| | ||||||||| | ||||| ||| || || || || ||||||| || | Sbjct 331639 CTGGCCGGGCTGCCCGTGAAGGTCTCGTACGGGCCATCCTCCTTCGCCAGCTC-CATCGA 331581 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT-GTTCATGTCGCGG-GCC 244444 | |||| || || ||||||| || ||||||||| ||| ||||| ||| | ||| Sbjct 331580 CGACTCGACAGCAGCAAAGTAGATCGTTTCGAAGATC-TCTGCGTTCACC-CGCTGCGCC 331523 Query 244445 TT-GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503 | |||| || || || | | ||| | |||||| |||| || || ||||||||||| Sbjct 331522 TCCGCCG-AGACAAACGGCAGTCGCATGAGGATGAAGGCGTCCGCGAGCCCCTGCACGCC 331464 Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG-CATGGCTTCGGGCACGGGGTAAAAGT 244562 || ||||||||| | || ||| |||| ||| | | | || | || ||||| ||| Sbjct 331463 GAGGCCGATGGGGCGGTTGCGCATGTTACTGCGGCGCGCCGTCTCG-ACCGGGTAGTAGT 331405 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCG--GACGACGTCGGCCAGCAG 244620 ||| ||| || ||| ||| ||||| || |||||| ||| | | ||| | || || Sbjct 331404 TGCGGTCAATAACCCGGTTTAGGTTACGTGTGATC-TGCTTTGTC-ACGGTGTAGAGAAG 331347 Query 244621 CTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGC 244680 ||| || | |||| || || ||| | || | || || || Sbjct 331346 CTGGTGGTTGAACTCACGCTTCTCAACGTCGACG-----------AAGCGCGGC-AGCGC 331299 Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740 || | ||| |||||||| || ||| ||||| | ||||||| ||||||||| || Sbjct 331298 GATGGAGGCGAGGTTGCACACCGCCGTCTCCTGTGGCGACGTGTACTCGACAATCTCCGT 331239 Query 244741 GCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 ||| ||||| ||||||||| ||||| || | || || || |||||| |||||| || Sbjct 331238 GCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCATGC 331179 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860 |||||||||||| | ||| ||||| || ||||||| ||| | | |||| ||| Sbjct 331178 GTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATAGCAAACCA 331119 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAG 244920 | ||| |||| || |||| || | |||||| | ||||||||| ||| || Sbjct 331118 CACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGCGCTCGTAGAG 331059 Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAG 244980 ||| ||||| || || ||| || || ||||||| || ||| || Sbjct 331058 CCGCTCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTGGGATCCATCAG 330999 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCC-TCTGCATGAAGAGGTCGGGGATCCAGAGGGCCT 245039 |||||| || || || || | ||| ||| || || || |||||||| || || | Sbjct 330998 CGTCCACTTCCCCTCGCTTTTCACACGTCT-CATAAACAGATCTGGGATCCACAGCGCGT 330940 Query 245040 GGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGT 245099 ||||||||| | || | ||| || || || ||||| ||||| || |||| Sbjct 330939 AGAAGAGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCAGCAGCAGAAAGC 330880 Query 245100 CAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGC 245159 |||||||||| ||||||||||||| | ||||| |||| |||||| ||||| || Sbjct 330879 CAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGC 330820 Query 245160 CTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATG 245215 | |||||||||| | | || ||| |||||||| ||| || | ||||| | Sbjct 330819 CGCCCTGGTCCA----CGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCACGAGC 330764 Query 245216 CCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATG 245275 ||||| || |||||| || || |||||| |||| ||| | | || || || || Sbjct 330763 CCGTTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCC--GCCGC-GCGGATGTTG-TG 330708 Query 245276 GACATG----CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTC 245331 || || || | |||||||| ||| ||| | ||| || ||| | ||||| Sbjct 330707 CACGTGCAGACCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCTTCAGCGTGTC 330648 Query 245332 TGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGG 245391 ||||| || |||||||| |||| | ||| ||||| ||| || || || Sbjct 330647 GTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGG 330588 Query 245392 CTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGC 245441 ||| ||| ||| | ||| || || || ||| |||||||||| ||| ||| Sbjct 330587 CTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGC 330538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338775047360