Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq28 316 2e-81 seq22 109 5e-19 >seq28 Length=1168530 Score = 316 bits (350), Expect = 2e-81 Identities = 604/868 (70%), Gaps = 25/868 (3%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTC 153655 || || || || || || || || |||||||| | |||| || |||||| || ||||| Sbjct 331300 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTGTGGCGACG-TGTACTCGACAATCTC 331242 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715 | ||| ||||| ||| || || ||| | ||| | ||| || |||| ||||| Sbjct 331241 CGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGCTGTTGCA 331182 Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA--AAC 153773 ||||| ||| |||| | | |||| || || ||||||| || | || | |||| || Sbjct 331181 TGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGATAGCAAA 331122 Query 153774 CTATGCAGGTCCTGCGCTCGCACCCGCT-GCCGATAGCGGCCCTCGCTCTCGTATCGCTC 153832 | | || ||||| || | | | || | || |||||||||| |||||| ||||| Sbjct 331121 CCA--CACCTCCTGGGCCTGGATCGTCTTGACGCC-GCGGCCCTCGGACTCGTAGCGCTC 331065 Query 153833 GTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACAC-TGATGCGGAC 153891 ||| || ||||||||||| || || ||||| ||| ||| || || ||| || || ||| Sbjct 331064 GTAGAGCCGCTCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTG-GGAT 331006 Query 153892 ACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGA 153951 |||||||| |||| | | ||| || || |||| ||| |||||||| || | ||| | Sbjct 331005 CCATCAGCGTCCACTTCCCCTCGCTTTTCACACGTCTCATAAACAGATCTGGGATCCACA 330946 Query 153952 GCGCGTACATGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATT 154009 ||||||| | |||||||| |||| || || || ||| ||||||||||||| Sbjct 330945 GCGCGTAGAAGAGGTCGCGGGCGCGCTG--GTCATCTTTTCCCGTGTTGCGTTTCAGCAG 330888 Query 154010 GAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACG 154069 || | || | ||| ||| ||||||||||| || | |||||||| | ||| || || || Sbjct 330887 CAGAAAGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCG 330828 Query 154070 CTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTC 154126 ||| |||||||| || |||| ||| | | |||||||||||||| | ||| || | Sbjct 330827 CTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTGGCAC 330768 Query 154127 CAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATG 154186 || ||| | | |||||||| || | || | |||||| ||||| | | || Sbjct 330767 GAGCCCGTTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGCGGATGTTGTG 330708 Query 154187 CACGTTAACGCCAATGCCGCC-GCCGTACTTTGAT-ATGGCAGCGCAGTCGCCCAGCGTC 154244 ||||| | ||||||||||| |||| ||||| | || | || || || |||||| Sbjct 330707 CACGTGCAGACCAATGCCGCCGGCCG--CTTTGCTGATCACGGCACACTCCTTCAGCGTG 330650 Query 154245 CTGTAGATGCCGTCGATGCTATCGT-CGCGGACGCCGAGCAAGAAACACGAACACATTTG 154303 |||||||||||||||||| || | | |||||| | || ||| ||||| | |||||| Sbjct 330649 TCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCC-ACCAGGAAGCACGAGCTCATTTG 330591 Query 154304 CGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGT-AAACAGTTTTTGGC 154362 ||| | | || || || ||||||||| || | ||||| || || || |||| Sbjct 330590 CGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCCTTGG- 330532 Query 154363 TCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGA 154422 ||| | | |||||| || | | | || ||| ||||||||||||| || |||| Sbjct 330531 ACATAAGGTCGTACGTCTCACGCACATTCTTGAGATCTGCGCCGTGAATGCCAAGAGCGA 330472 Query 154423 CGCGCATGAGCATGTGCTGCGGACGTTC 154450 | ||||||| ||| ||||| || || || Sbjct 330471 CACGCATGAACATCTGCTGTGGGCGCTC 330444 >seq22 Length=675415 Score = 109 bits (120), Expect = 5e-19 Identities = 142/192 (74%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 52649 CGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGT 52707 |||||||||||| |||| | |||||||||||| || ||| ||| |||||||||||| Sbjct 513227 CGCGCTGCCGGTGCGGCTGATTGGCATGAACGCGGAGCTGATG-GCGCAGTACATCGAGT 513169 Query 52708 TTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCG--CAA 52765 | || ||||| || ||| ||||| |||||| || ||| ||| | |||||| | Sbjct 513168 TCGTCGCGGACCGGCTGCTGGTGTCGCTCGGCGAGGAGAAGCACT--ACCGCTCGACGCA 513111 Query 52766 TCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCG 52825 ||||| || || ||| | | || ||||| ||||||| || ||||| ||||||||| Sbjct 513110 GCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTCGAGAAGAA 513051 Query 52826 AGTCGGCGAGTA 52837 || || ||||| Sbjct 513050 GGTGGGGGAGTA 513039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262176681920