Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20donovani_20[genbank_20GCA_5F001989955.1_202017-02-07] 36 sequences; 32,148,377 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq28 125 7e-24 >seq28 Length=1168530 Score = 125 bits (138), Expect = 7e-24 Identities = 565/881 (64%), Gaps = 51/881 (6%) Strand=Plus/Minus Query 146635 GCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAA----TACTGCACAAT 146690 ||||| ||||| | ||| || || || ||||| | || || | |||| ||||| Sbjct 331300 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCT----GTGGCGACGTGTACTCGACAAT 331245 Query 146691 CTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTT--ACTAAACTTG 146748 ||| | ||| ||||| ||||||||| |||| | ||| || ||||| ||| || Sbjct 331244 CTCCGTGCATAGGTTCGAGCACTTGATCGTGCCAAGATTCTTCTGGTTCGACTTGC--TG 331187 Query 146749 TTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATG 146808 ||||| | |||||||||||| | | |||| || || || |||| | | ||| | ||| Sbjct 331186 TTGCATGCGTCCTTGTAGAGGACGAACGGCCCTCCCGTCTCGATCTGAGACTCCAGGAT- 331128 Query 146809 AATCTAAACAAATCTC-TGGCCTTTACTTGTCTTT-CGTACAGTTTATTCTTTTCGTATT 146866 | | || || | ||| ||| | | | ||||| || | | ||||| Sbjct 331127 -AGCAAACCACACCTCCTGGGCCTGGATCGTCTTGACGCCGCGGCCCTCGGACTCGTAGC 331069 Query 146867 TCTCGTACAATATTTCAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGG 146926 |||||| | ||||| ||| || ||| ||| || || || | |||| Sbjct 331068 GCTCGTAGAGCCGCTCAAACTCTTCACCATAGCAATCGCTGAGACCCGGGCACGTGTTGG 331009 Query 146927 GACAGAACAGCGACCATTCTTTATTCTCCTT-CACGCGTTCCATAAACAAATCGGGAATC 146985 || | ||||| ||| | | || | || ||| ||| |||||||| ||| || ||| Sbjct 331008 GATCCATCAGCGTCCACT-TCCCCTCGCTTTTCACACGTCTCATAAACAGATCTGGGATC 330950 Query 146986 CAAAG-GCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAA 147044 || || || || | | |||||| || ||| || ||| |||||||| ||| Sbjct 330949 CACAGCGCGTAGAAG-AGGTCGCGGGCGCGCTGGTCATCTTTTCCCGTGTTGCGTTTCA- 330892 Query 147045 GTTGAGGACATCGTAA-ATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTT 147103 | | || | | || | || | ||||| ||||| | || |||||| ||||| | Sbjct 330891 GCAGCAGAAAGCCAAAGACGTCAGCGTGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCT 330832 Query 147104 TTCGCTTACCGCC---CTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGG 147160 | ||||||||||| ||| || |||| ||| | |||| |||||||| |||| ||| | Sbjct 330831 TGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACGCGTAGCATTG 330772 Query 147161 ACACGAGGCCGCCGGATTTTGTGGTGCCGTTG--------TATTGAGC----------GC 147202 |||||| ||| || | |||||||| ||| ||| || Sbjct 330771 GCACGAGCCCG------TTCGACGTGCCGTTCGTACCAGCTATGTAGCTGCCCGCCGCGC 330718 Query 147203 TGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGT 147262 || | | |||||| ||| || | || ||| || || |||| || |||| | Sbjct 330717 GGATGTTGTGCACGTGCAGACCAATGCCGCCGGCCGCTTTGCTGATCACGGCACACTCCT 330658 Query 147263 GCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTT-GATGCATTGCAGGAAACACGAA 147321 || || | ||||||||||||||||||||||||||| || || |||||| ||||| Sbjct 330657 TCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCGACGCCAC-CAGGAAGCACGAG 330599 Query 147322 CACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTG 147381 | |||||| || ||||| || ||| || || ||| ||||||| ||||| | Sbjct 330598 CTCATTTGCGGCTTCGGGGTGCCGGCGTTAAAGAGGGTCGGGGTGGCGTGGGTGAAGAAG 330539 Query 147382 CCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCC 147441 ||| ||| | | ||||| ||| | || | | || ||||||||||| | Sbjct 330538 CCCTTGGACATAAGGTCGTACGTCTCACGCACATTCTTGAGATCTGCGCCGTGAATGCCA 330479 Query 147442 AGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAAT 147482 || ||||| ||||||| ||| ||||| || || ||| |||| Sbjct 330478 AGAGCGACACGCATGAACATCTGCTGTGGGCGCTCCACAAT 330438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500586024640